Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00998 ATGGATGTGAGCGACGTTAACAAAGTTTGGGAAATTAAAGCCTTGAAGAAGAAGGCTGGAGAGAAAGAAGCAAAGGAGATGCTGGAGAGAATTGCGAAACAAGTCCAACCCATTATGTGTAGGCACAAATGGCGAGTCAAGATTCTTTCGGAGTTCTGCCCAAAAAATCCAGCACTTTTAGGGGTAAATGTGGGACGTGGAATTCATGTGAAGTTGAGGCTTCGAAGGCCAAATAGGGATGGAGATTTCTTCCCTTTCAATCAAGTGTTGGATACAATGCTACATGAGCTTTGCCACAATCTTCATGGTCCTCACAATGCCAATTTCTACAAGCTTTGGGATGAGCTTAGAAAGGAATGCGAGGAGTTGATGGCTAAGGGAATTAGTGGTACAGCACAGGGATTTGATATCCCGGGGAGACGCTTGGGTGGTAATAGTCATCAACCCCCTCTTTCTTCCCTCCGCAAATCTTCCCTAGCTGCTGCAGAAGGAAGAAGGCGTTTGAGATCTCTACTTCCATCTGGGCCTAAACGGCTTGGTGGTGATAGCGACATCATGGTCGCATTAAGTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGGCTTCAGGATGATATTTGGTGCGCTTCATCTCAAGCAATGCCTGTGGATGAGGATTGTTGCTCTGATTTTTCATCAGAAGTTGCGCTTCGCCCCCAAGCAGGTGAATCACAACTGTTTAGCAATCCAAGTCAGGGTATGGATGCTTTCCACGATAAAAGATGTCGTGAGACGGAAAGGAGTTCTATTAAGTCATCCAATGGTCACCTGAAACCCGATTTTGTAATCCCTGGTTCCTCTGCTGACTATGATGCTGAATCAAATAAGCGTCATAAAATGACATTTAGAGTTCCATTTCCTCAATCTTGTGCAGAAACTAGCTCAATAGATCGTCCCTGTTCATCCTCTAATTTGATGCCAATTCATGATGGAACTACTCATCCTGGAGAACTTTCCATGTGGGAGTGTGGAAATTGCACCTTACTGAATCCACCACTAGCTCCAATATGTGAGCTCTGTTTCTCACCAAAGTCAAAAGCTGCTGATACCAAATACAAATTCTGGTCATGTAAGTTCTGCACCTTAGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCCTGTGGTCAATGGAGATATTCTCATGGCCAGCCAGTGTCGACTCGAGGACCAAATATTGGCACGTGA 1227 44.99 MDVSDVNKVWEIKALKKKAGEKEAKEMLERIAKQVQPIMCRHKWRVKILSEFCPKNPALLGVNVGRGIHVKLRLRRPNRDGDFFPFNQVLDTMLHELCHNLHGPHNANFYKLWDELRKECEELMAKGISGTAQGFDIPGRRLGGNSHQPPLSSLRKSSLAAAEGRRRLRSLLPSGPKRLGGDSDIMVALSPVQAAAMAAERRLQDDIWCASSQAMPVDEDCCSDFSSEVALRPQAGESQLFSNPSQGMDAFHDKRCRETERSSIKSSNGHLKPDFVIPGSSADYDAESNKRHKMTFRVPFPQSCAETSSIDRPCSSSNLMPIHDGTTHPGELSMWECGNCTLLNPPLAPICELCFSPKSKAADTKYKFWSCKFCTLENSVKLEKCSACGQWRYSHGQPVSTRGPNIGT 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5090093 5094725 - CmaCh09G009980.1 Cma09g00998 301003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00998 408 ProSitePatterns Zinc finger RanBP2-type signature. 335 354 IPR001876 -
Cma09g00998 408 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 408 - -
Cma09g00998 408 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Cma09g00998 408 SUPERFAMILY Ran binding protein zinc finger-like 333 358 IPR036443 -
Cma09g00998 408 Pfam WLM domain 8 204 IPR013536 -
Cma09g00998 408 PANTHER ZINC ION BINDING PROTEIN 1 408 - -
Cma09g00998 408 CDD M48_yhfN_like 93 119 - -
Cma09g00998 408 SMART zf_4 367 391 IPR001876 -
Cma09g00998 408 SMART zf_4 333 357 IPR001876 -
Cma09g00998 408 Gene3D - 329 368 - -
Cma09g00998 408 ProSitePatterns Zinc finger RanBP2-type signature. 369 388 IPR001876 -
Cma09g00998 408 ProSiteProfiles Zinc finger RanBP2 type profile. 328 360 IPR001876 -
Cma09g00998 408 ProSiteProfiles Zinc finger RanBP2 type profile. 365 394 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00998 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - csv:101209563 682.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01083 Cma09g00998 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00056 Cma-Chr2:268863 Cma09g00998 Cma-Chr9:5090093 3.52E-10 dispersed
Cma03g00091 Cma-Chr3:901536 Cma09g00998 Cma-Chr9:5090093 8.67E-22 dispersed
Cma09g00998 Cma-Chr9:5090093 Cma20g00243 Cma-Chr20:1180911 3.55E-14 dispersed
Cma01g01083 Cma-Chr1:7979453 Cma09g00998 Cma-Chr9:5090093 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00998 Cma_Chr09 FPKM 1.445338 0.802724 1.53224 1.217978 3.192286 3.875939 3.609532 1.659477 1.136278 1.329087