Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01003 ATGTATATAAGACGGAATGTTTCCAAAACCAGAAGCATTGAACAAAAAATGGCGGGAAATCTCGGAAGATCGGAGAGAATCGACATCATGAGGAAAATCAGAGAGCTAACAAGATCTATGATCGTTGAACTGAGTAATGGAAGCTCCAAGATGATCGCTATCGATCGGTTTAAAAATTACTGCATTAATTCCATTGAAAACTGTTGCTGCAGGTTCAATTTATCTGAAGGGAAGGAGATTCTAACGCTTCAAAGGGAAAGCCATGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTACTCATTATTCAGCAGCTTCTGCGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTGTCTTTACAGATCAGTCTGTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTAAATGTGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGGTTCGCAGAAGCTGGTAGGAGATCTGATTGCATAAAGAAGCCTAACAGTGCCCACTCCATTCCTGTTCAAGTTGAAGAAGTCACAGATATTGCTAGTCCTGCGAATTACATACTCGTTGTTGAGAAAGAATCAGTTTTTCAGCGTCTAGCAAATGACCATTTCTGCAGCAGAAACCGGTGCATTGTAATCTCGGGACGTGGATATCCAGATGTTCCTACTAGAAGGTTTCTGCGGCTTCTCGTTGATGTCTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATATGGGTTTGACATTCTGACAACATATCGATTCGGTTCTATGCAAATGGCCTACGATGCGAAGTATCTCAGAATCCCACAACTACACTGGCTTGGAGCTTTTGCTTCAGATTCTGACACATACAATCTACCACAACAATGTCTCATCCCATTAACTTTGGAAGACAAGAGGAGAACTGAAGCCCTGTTACTAAGATGTTACTTGCGGAGGGAGGTACCACATTGGAGGTTGGAATTGGAGTCAATGCTGCAAAGGGGTGTAAAATTTGAGATAGAAGCACTGTCTGTACACAATATTTCCTTTTTGTCAGAGGAGTATTTACCATCCAAAATAGAAAGTGAACTAACAAAGGGTAAATAA 1140 41.32 MYIRRNVSKTRSIEQKMAGNLGRSERIDIMRKIRELTRSMIVELSNGSSKMIAIDRFKNYCINSIENCCCRFNLSEGKEILTLQRESHVRRLDVLLRVLLIIQQLLRENRHSSKRDIYYMHPSVFTDQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLRFAEAGRRSDCIKKPNSAHSIPVQVEEVTDIASPANYILVVEKESVFQRLANDHFCSRNRCIVISGRGYPDVPTRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMQMAYDAKYLRIPQLHWLGAFASDSDTYNLPQQCLIPLTLEDKRRTEALLLRCYLRREVPHWRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELTKGK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5112831 5116781 + CmaCh09G010030.1 Cma09g01003 301008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01003 379 Pfam Type IIB DNA topoisomerase 90 151 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cma09g01003 379 Gene3D - 14 154 IPR036388 -
Cma09g01003 379 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 23 373 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 CDD TOPRIM_TopoIIB_SPO 199 361 IPR034136 -
Cma09g01003 379 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 23 373 - -
Cma09g01003 379 PRINTS SPO11 homologue signature 120 140 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cma09g01003 379 PRINTS SPO11 homologue signature 358 377 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cma09g01003 379 PRINTS SPO11 homologue signature 262 281 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cma09g01003 379 PRINTS SPO11 homologue signature 215 230 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cma09g01003 379 PRINTS SPO11 homologue signature 297 321 IPR013048 GO:0003677|GO:0003918|GO:0042138
Cma09g01003 379 Gene3D - 156 375 - -
Cma09g01003 379 SUPERFAMILY DNA topoisomerase IV, alpha subunit 89 373 IPR036078 GO:0003677|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 257 273 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 225 246 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 114 125 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 201 218 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 128 145 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cma09g01003 379 PRINTS DNA topoisomerase VI subunit A family signature 146 161 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01003 K10878 SPO11; meiotic recombination protein SPO11 - csv:116406416 613.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00468 Cma-Chr3:4733481 Cma09g01003 Cma-Chr9:5112831 4.05E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01003 Cma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.193436 0.0 0.0 0.0 0.0 0.388251