Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01005 ATGTTACCAACATCGTCTAATACCTTCGTAACAAGGTCAATAGATATTCCAAGGAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATTCGGGTTCTCCTCATACAGAGACCACCAGCACCGCTACTGGTCTAGTTCCACGTTCAGGATTAGTTTTTGGAAATCTACACCCGAGTTTTATAAGAGTAGCCTTAGTTTTAATAATGTACTTGGGTATAGGAACTTTATGTGTTTACCTTGTCAGGCACCAAATCAAAGGGGGAAAAACCAACGGAGTAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGTGATCTTGTCCCAAACACTCCTTCCACAAAGCTACTAGCTTGTGCTTTTATGTTCACAGGAATGGCCGTAGTTGGCCTAATATTAACCAATGCAGCTGATTATTTGGTAGAGAAGCAGGAGATCTTTCTATTTAAGGCCTTCCATATGCACCAAAATGGTTCTTGCGGCAGAACAGAAAAAATTGATACTAATAAAGCTAGAAATAAGTGTATAGTGGTGTTTCTTTTTCTTCTTTTGTTCATAATTTCTGGGACTGTCTTTCTAGTTACCCTTGAGAAGTTGGATTTTATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACATTAGGCTATGGAGATAAAAGCTTCTCGACCCGGTGGGGGCGTCTATTCGCCATTTTCTGGATCTTGATAAGTTCCATCACTCTGGCTCAGTTTTTCCTTTATATTGCTGTGCTAAACACTGAAAGAAGGAAAAAATCTCTGGTGAAGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGGAAAATCACTGAAGATGACATTTCACCTGTTCTGGACGAATTTGAGAATCTTGATGTTGATCAATCAGGAACATTACCTTTCATGGCGCCTGGGACTGTGACTGCTCGAGCCACAGGCGCCATTATTGCCGCCATCTCTGTTTCTATGGTCCTCTTCTCTTACCTTCTTCGCAAACACCATTCGAAGGATCATTCGATTTTTCTTCTGTTTACTGATTTCTTGTTTGGTTTTGGTTTAATTCTTGGGAAGTGCGAGTTCTTGAATCCGGGTGGAAGTGTGAAGGATAGAGTTGCAGTTAAGATCATTGAAGAGGCCTTAGAATCTGGTAAGCTAGTTGAGGGTGGTGTAGTTACAGAGGGAAGTGCTGGAAGCACTGCCATAAGTCTTGCCACAGTTGCTCCTGCTTATGGTTGCAAGTGCCATGTGGTTATTCCAGATGATTCTGCTATTGAAAAATCTCAAATACTTGAAGCGCTTGGAGCTCATGTTGAAAGGGTAAGACCAGTGTCAATTACGCACAGAGATCACTTTGTTAACATTGCTAGGAGGAGAGCTGCGGAAGCCAATGAGCTAGCTTTGAAGAACAAAAAAGAAGAGCAACTATTTGTGGGAGGCAAGAAACAAAGTAATGGTCACATTTATGAGGGAGGAACCCAAGAGTCCTCTTTCTCAAGTAATTGCAAAGGTGGCTTCTTCGCTGATCAATTCGAAAACTTGGCGAATTATCGAGCTCATTATGAGGGTACGGGACCAGAGATTTGGGAACAAACTGGTGGGTGTATAGATGCCTTCGTTGCAGCTGCGGGAACCGGTGGCACCGTGGCTGGTGTTTCCAATTTTCTCCAGGAGAATAATCCAAATGTGAGGTGTTTCCTCATAGATCCTCCTGGCTCAGGCCTGTTCAACAAGGTGACTAGAGGAGTTATGTACACTAAAGAGGAGGCTGAAGGACGAAGATTAAAGAACCCTTTTGACACAATAACTGAAGGAATTGGAATCAATAGATTAACGCAGAATTTCTTGATGGCAAAACTTGACGGGGCATTTCGTGGAACAGACAGGGAAGCCGTTGAAATGTCAAGATATCTGTTGAAGAATGATGGGCTCTTTCTAGGGAGCTCTTCGGCCATGAATTGTGTTGGAGCTGTGAAAGTGGCACAGTCACTTGGCCCTGGCAACACTGTTGTCACCATTCTTTGCGACAGTGGAATGAGGCATCTGAGCAAGTTTTTCAGTGCAGAGTATCTGAGTCAATACGACTTGACGCCCAAGGCTACCGGCTTAGAATTTCTGGAATCCAGGTGA 2151 43.05 MLPTSSNTFVTRSIDIPRSKRRLRRTKSAPHSGSPHTETTSTATGLVPRSGLVFGNLHPSFIRVALVLIMYLGIGTLCVYLVRHQIKGGKTNGVVDAIYFTIVTMTTVGYGDLVPNTPSTKLLACAFMFTGMAVVGLILTNAADYLVEKQEIFLFKAFHMHQNGSCGRTEKIDTNKARNKCIVVFLFLLLFIISGTVFLVTLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISSITLAQFFLYIAVLNTERRKKSLVKAAEFVIYKLKEMGKITEDDISPVLDEFENLDVDQSGTLPFMAPGTVTARATGAIIAAISVSMVLFSYLLRKHHSKDHSIFLLFTDFLFGFGLILGKCEFLNPGGSVKDRVAVKIIEEALESGKLVEGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDSAIEKSQILEALGAHVERVRPVSITHRDHFVNIARRRAAEANELALKNKKEEQLFVGGKKQSNGHIYEGGTQESSFSSNCKGGFFADQFENLANYRAHYEGTGPEIWEQTGGCIDAFVAAAGTGGTVAGVSNFLQENNPNVRCFLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDREAVEMSRYLLKNDGLFLGSSSAMNCVGAVKVAQSLGPGNTVVTILCDSGMRHLSKFFSAEYLSQYDLTPKATGLEFLESR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5128133 5133645 + CmaCh09G010050.1 Cma09g01005 301010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01005 716 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 365 383 IPR001216 GO:0006535
Cma09g01005 716 PANTHER CYSTATHIONINE BETA-SYNTHASE 362 714 - -
Cma09g01005 716 Gene3D - 373 524 IPR036052 -
Cma09g01005 716 SUPERFAMILY Voltage-gated potassium channels 175 266 - -
Cma09g01005 716 CDD CBS_like 362 690 - -
Cma09g01005 716 PRINTS Two pore domain K+ channel signature 103 131 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma09g01005 716 PRINTS Two pore domain K+ channel signature 219 228 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma09g01005 716 Gene3D - 362 689 IPR036052 -
Cma09g01005 716 Gene3D - 165 285 - -
Cma09g01005 716 SUPERFAMILY Voltage-gated potassium channels 58 161 - -
Cma09g01005 716 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 362 698 IPR036052 -
Cma09g01005 716 Pfam Pyridoxal-phosphate dependent enzyme 362 683 IPR001926 -
Cma09g01005 716 Gene3D - 58 152 - -
Cma09g01005 716 PANTHER CYSTEINE SYNTHASE-RELATED 362 714 - -
Cma09g01005 716 Pfam Ion channel 187 256 IPR013099 -
Cma09g01005 716 Pfam Ion channel 67 147 IPR013099 -
Cma09g01005 716 MobiDBLite consensus disorder prediction 20 43 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01079 Cma09g01005 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01005 Cma-Chr9:5128133 Cma18g00614 Cma-Chr18:5434263 4.42E-95 dispersed
Cma01g01079 Cma-Chr1:7960855 Cma09g01005 Cma-Chr9:5128133 5.09E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01005 K01738 - csv:101216270 650.203