Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01015 ATGGCGGCGATGGAGAAGCTATTTGTGCAGATCTTTGAGAGGAAGAAGTGGATCATTGACCAGGCCAAGCACCAGACCGATCTCTTCGACCAACAACTTGCGTCCAAGCTCATTATCGATGGAATTGTTCCTCCGACTTGGCTCCACTCGCCTTTTCTTCATTCCAACATTTCGCATTTTGAAGGTGTAGGAGTGAGCAGAAATTTTGTTCCTGGAGTTGAGGTCCCACGGTCGCCGCTTCAGACCCATCGTTCTAGTTTGAATGAGGCATTTGTTGCAAACAGTGGGGAGGAATTGCAGCAAAGGTCGAATGAAGATGCTGGTTCTTTAAACGATGATTTTGATGCAGGAATTAGGCCTCCAGTTTTACCTCAGTGCGATACAAGTGACGCCTGTGTCTTAAATTGCGCAACTCGTGTTGACACGAGTCCTGTTTCTCCCCAAGGTCGAGGAGGCGTAGTTTTAGAAAACTACCAAGATCCTACTCTGTCACGGGCACGGTTACATAGATCTAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGCGCGAAATCTGCTAGGTGCCACTCCCGGTATGAGAACAAGAATGATTCCGTTGCTGATGGGCTCGGGGGATCTGCTATTAGTTTGCTGCAAGCTGATGACGAAGATGAATCATTGGCAAAGCCTTCTAGCAGCTGTAAGGGAATTGGTTCTATGGAAGAGGAGACTAATGTTTGTTGCGAGCAGAAGAATATCTCTATTTGCTCTGATAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGTGTGAAATCTTCTAGGTGCAACTCCCGGTATGAGAATGAGAATGATTCCGTTGCTGATGGGATTGTGAGATCTGCTATTAGTTTGCTGCAAGCTGATCACGAAGATGAATCAGAATTGGCAAAGCCTTCTAGCAGCTGTAAGGGAATTGGTTCAGTGGAAGAGGAAACTAATGTTTGTTGCGAGCAGAAGAATATCTCTATTTGCTCTGATAAAGTTACAATAGTTGGAAGCCCTGGGTTGCAAAGTAGCTCTATTGATTTGGTTAATTCTTTAAATATTTACTTAGAAAATGAAGGGTTATGTGTAGCGGAAGGTTCAATGCAGAATTCTTATAAAGTGAATGAGCAATTTGACTCGCCTAGAACTTCTTCGGGAAAGATTGGATACTGTGAAGAAGGGCCGGCATGTTGCAGGAGCCAGGAATCTAATTTTGATAACGCTGAACTGTCTAGGATGCAATGTAGCTCTTTGGATGTGGATAAATCTCCACGCATTCCCCCTGAAGATGGAAGAGGGTGTCCTATAGGAGGATCAAAATTGCATTCTGATCAAGTGGACGAGCAACTGGACTTGCCTAAACCTTCTTCTGACAATGTTGAGTGCGGTGAAGAGGCAGTATTAGTAGACTGCAGGAGCCAGGAATGTAATCTTGACAATGCTCTACAGTCCGAGTCACAACGAAGTTCTTTGGATGTGGACGATTCAGCATGCATTGATGCCACTGATGGAAGATTATTGGACTTGTCTAATCCTTCTTCTGGCAATGTCAAATGCCGTGAAGAAACTCTTTTAGGACATTGTAGGAGCCACGAATTTAATTTTGATAATGCCCGAGAGGCTGGGTTGCTATACAACTCCCAGGATGTAGATAAGTCTTCATACGTCCACTCTGAGGACGGACGATCATGTCCTAATGGAAGTTCAGAAGTGCATTCTGATGAACTGAAAGAGCAATTGGACTTATCTAAATCTTCTTCCGACAATATGGAGTGTTGTGAAGAAGAAATATTAGGAGATTTCAGGAATCAGGAGTATAATTTTAATAATGCTCAAAAGTCTGGGATGCAACATAACTCCCTGGATGCGGATAATTCATCATGCTTTTCTTCTGAAAATGGAACTTGTTCTGTTGGAAGTTCAAAACTACATTCCGATCGAGTGAGTGAGCCGTTGGAGTTGTTTAGGTCTTCTTCTACCAATGTTGAATGCCATGAAGAAGGACTAGGAAACTGTAGGACCCAAGATTGTAATTTTGATAATACTGCAGAAAAGTCTGGTTTAGACAAAATTTCCAGTTCACCAATAACGGAAGTAAGGGAGAAAACATCAGATAAGAAGCCCTCCACTTCCGTGGATAACAAGAGGGATGTTAATGAAAAAGAAAAATGCAATTCATCCCTTCACATGCCTATACCGCAGATTCAGGTCGACTCATTGAACGAAGACGAATATGATAAAGATGTATATGAATCTCAAAGTGAAAAGAGATATGATAAAGAAGTAGCTACTTGTTCTTTGCTGCAAAGTGATGAACCTGCAGAACAGAAGATTTCTTTGAAAGACGGAGTGCCGAATTTGCAGTATTCCCATGAAAATGCAGTTGAAATTCAACTAGTGGATACAGACGATGCATCAATTCTGATAAGAGATACAGAAACGTTTAGAGATCAAATGGTCATGGCTCCTTGTGTTCCTTCCGCTGGTGAGGGGGATAGTAATTTGGAGCAGCAACTAAAAAGTTCAGGCATAACTCAGTGTGAAGATTCAGATTCCTTTGAGGGTTGCACTGATCACATGGTCATGGCTCCTTGTGTTCCTTCCGCTGGTGAGGGGGATAGTAATTTGGAGAAGCCACTGAAAAGTTCAAGCATAACTCAGTGTGAAGATTCAGATTCCTTTGAGGGTTGCACTGATCACTTGAATGGTAACCATCATTACTTATCAACTGAGTGCCAGACTGCAGAGACATCAATAGAGTTAAAAACTTTCAGCTCAGTTTTGAGGGCATCTAGTTCCGACCAAAAGGAGATAGAGGTTGAGCTGCAATTGGACAATGGTATTCCAGCGTCTTTAGGCTTGAGGAGTGAGCAACTTCAAATTATCAACAGGAGTCCCATAGATAAAAACTTGATGCAGGAATTTGACACTGAAAAACCTGTCCTTGAACTTCAACGATTATCATTTTGTGAAGAAGGTTACCAACAACCAAATGTGAGCATCGGCCCCATTGAAATGTTGCTATTGGAAAAAGAAGCTCACATAATTCAGGGGTCTGATTCTTCACCCACGCTTCCAGTCAAAGAGGACCTCTCTCGGTTCGGAAGCAATAACAGAGGTACACCATTGCAAAATGGTATGCTAGAGAGCCAAAGTTTGGTTCCCGAAGAAAATTTTCAGTGTGGAGATATTGAACTTCCTATGGATACTGGGAAAACTGATGGAATGGAGGAAAAGGGGAAACTTACTTTGTGCTCGCTTCATACTCCGCTTACCCAAACTTCTCATTATCTTGGTGCAGACAAGGATATGCCTGCTTTAGAGGGGTTCCTAATGCAATCTGATGACGAAGAGCCATGCATTTCTGTTGGTGGAATCAACTTTGACAAATTAGATCTTTCAAAATGTATGATAGAACGTGCTAGCATCTTGGAGAAAATTTGTAAATCTGCTTGTATGAACAGTACATTATCCTCACCTTCAGAAAGTTTTAGGCTGAACAAGGTGACAGATTTGTACAATTCTCTTCCTAATGGTCTACTAGAGTGCATGGACTTGAAGAATAACCTTCTGATGAATGATCAAAATAAGCTACTGAAGAATGGTAGTAACTTTTTGAATGGAGAAGTCAACTGCTCTCCTCATGGGTCTTCTTTTGATTGCCTGCAAAGCTTTAGCAGTCATTCAGCTGGTGATCTCAGGAAGCCATTTGCATCTCCGTTTGGTAAGTTGTTGGATAGAAATTCATTAAATTCGTCAAGTTCTGGAAAACGAAGCAGCCAGAACATAGAGCTTCCTTGCATTAGTGAGGAAGCTGAGAATACCGATGAGATTGATAACGAGTTTTCGAAGGATATAAGATCGAGCAAGCGAGCACCACTTGTTGACATTACAGAAGATGCAAATGTCAAGGTAACAGTTTCTGAAGCTGCGACGGTTGCTGATAGATTGAGTTTAGAATCTTTAATCATCGAACTCAGCAACACAGGGACTCATATTGGGACCAAAGAGAATCTGGGAAACCAGAAAAGCAGCAAGAGGAAATATGTGAATGAGGCTGTGAGTCGTGATACCTTGCCAGGAGAAAACGGTGCTAAAAGAGTCACTAGATCATCCTATAATACATTTAGCCGGTCAGATTTATCCTGTAAAAAAGATTTCAGAAAGGAAGGTCCTCGATTCTCTGAAAAGGAATCCAAGCATAGAAATATCGTGTCCAATATAACTTCTTTTATTCCTCTTGTCCAACAAAGAGAAGCTGCAACTATTTTGAAAGGGAAGAGAGATATTAAGGTGAAGGCCATCGAAGCTGCTGAGGCTGCAAAACGTGTTGCAGAAAAGAAAGAAAATGAACGTCAAATGAAGAAAGAAGCCCTGAAACTTGAAAGAGCAAGAATGGAACAAGAGAATTTGAGGCAGATTGAACTGGATAAAAAGAAGAAAGAAGAAGAGCGGAAGAAGAAGGAGGAAGAAAGGAAGAAAAAGGAGGTTGATATGGCAGCAAAGAAAAGACAGAGGGAAGAAGAAGAGAGGAAGGAGAAAGAAAGAAAAAGAATGCGTGTTGAAGAAGTTAGGAGACGATTACGAGAGCATGGTGGGAAGTTACGATCTGATAAAGAGAATAAGGAAGCAAAACCCCAAGCCAATGACCAAAAACCACGTGACAGAAAGGGATGTAAGGATGGGACTGTCAAACTGGTCAAGGAAAGTGGACATGACAGCTTTCACAAATTCTCGGTTACTGAGTCTAAGACTACTTCTACAAGCGATGCTGTGAGGGGAAGCTTTGTTGTGGAGGACTCACAACCAACGAGTGTTGATTTTCTAGAGGCAGAGGCACTTGAAAATGTGATGGAACATAGAATCTACGAAACAAGTGAAGAACAATCATATCAGATCTCTCCTTACAAAGCTTCTGATGATGAGGATGAAGAGGATGACGATGACGGCATACAAAATAATAAATTTGTTCCTTCATGGGCCAGTAAGGATCGCTTAGCTGTTCTTTTTGCTTCCCATCAAAAATTGGATCCAGAAATTATCTTTCCACCGAAAAGTTTTTGTGACATAGCTGAAGTTCTCTTGCCTCGACAACATCAGTTTAAATAG 5118 41.74 MAAMEKLFVQIFERKKWIIDQAKHQTDLFDQQLASKLIIDGIVPPTWLHSPFLHSNISHFEGVGVSRNFVPGVEVPRSPLQTHRSSLNEAFVANSGEELQQRSNEDAGSLNDDFDAGIRPPVLPQCDTSDACVLNCATRVDTSPVSPQGRGGVVLENYQDPTLSRARLHRSKSRQRALELRNSAKSARCHSRYENKNDSVADGLGGSAISLLQADDEDESLAKPSSSCKGIGSMEEETNVCCEQKNISICSDKSRQRALELRNSVKSSRCNSRYENENDSVADGIVRSAISLLQADHEDESELAKPSSSCKGIGSVEEETNVCCEQKNISICSDKVTIVGSPGLQSSSIDLVNSLNIYLENEGLCVAEGSMQNSYKVNEQFDSPRTSSGKIGYCEEGPACCRSQESNFDNAELSRMQCSSLDVDKSPRIPPEDGRGCPIGGSKLHSDQVDEQLDLPKPSSDNVECGEEAVLVDCRSQECNLDNALQSESQRSSLDVDDSACIDATDGRLLDLSNPSSGNVKCREETLLGHCRSHEFNFDNAREAGLLYNSQDVDKSSYVHSEDGRSCPNGSSEVHSDELKEQLDLSKSSSDNMECCEEEILGDFRNQEYNFNNAQKSGMQHNSLDADNSSCFSSENGTCSVGSSKLHSDRVSEPLELFRSSSTNVECHEEGLGNCRTQDCNFDNTAEKSGLDKISSSPITEVREKTSDKKPSTSVDNKRDVNEKEKCNSSLHMPIPQIQVDSLNEDEYDKDVYESQSEKRYDKEVATCSLLQSDEPAEQKISLKDGVPNLQYSHENAVEIQLVDTDDASILIRDTETFRDQMVMAPCVPSAGEGDSNLEQQLKSSGITQCEDSDSFEGCTDHMVMAPCVPSAGEGDSNLEKPLKSSSITQCEDSDSFEGCTDHLNGNHHYLSTECQTAETSIELKTFSSVLRASSSDQKEIEVELQLDNGIPASLGLRSEQLQIINRSPIDKNLMQEFDTEKPVLELQRLSFCEEGYQQPNVSIGPIEMLLLEKEAHIIQGSDSSPTLPVKEDLSRFGSNNRGTPLQNGMLESQSLVPEENFQCGDIELPMDTGKTDGMEEKGKLTLCSLHTPLTQTSHYLGADKDMPALEGFLMQSDDEEPCISVGGINFDKLDLSKCMIERASILEKICKSACMNSTLSSPSESFRLNKVTDLYNSLPNGLLECMDLKNNLLMNDQNKLLKNGSNFLNGEVNCSPHGSSFDCLQSFSSHSAGDLRKPFASPFGKLLDRNSLNSSSSGKRSSQNIELPCISEEAENTDEIDNEFSKDIRSSKRAPLVDITEDANVKVTVSEAATVADRLSLESLIIELSNTGTHIGTKENLGNQKSSKRKYVNEAVSRDTLPGENGAKRVTRSSYNTFSRSDLSCKKDFRKEGPRFSEKESKHRNIVSNITSFIPLVQQREAATILKGKRDIKVKAIEAAEAAKRVAEKKENERQMKKEALKLERARMEQENLRQIELDKKKKEEERKKKEEERKKKEVDMAAKKRQREEEERKEKERKRMRVEEVRRRLREHGGKLRSDKENKEAKPQANDQKPRDRKGCKDGTVKLVKESGHDSFHKFSVTESKTTSTSDAVRGSFVVEDSQPTSVDFLEAEALENVMEHRIYETSEEQSYQISPYKASDDEDEEDDDDGIQNNKFVPSWASKDRLAVLFASHQKLDPEIIFPPKSFCDIAEVLLPRQHQFK 1705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5191318 5201383 + CmaCh09G010150.1 Cma09g01015 301020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01015 1705 MobiDBLite consensus disorder prediction 1252 1279 - -
Cma09g01015 1705 Coils Coil 1434 1534 - -
Cma09g01015 1705 PANTHER TROPONIN I 166 1647 - -
Cma09g01015 1705 Pfam Inner centromere protein, ARK binding region 1642 1696 IPR005635 -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 558 577 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 698 727 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 1625 1658 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 422 445 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 1252 1271 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 96 116 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 1464 1565 - -
Cma09g01015 1705 MobiDBLite consensus disorder prediction 686 734 - -
Cma09g01015 1705 PANTHER TROPONIN I 166 1647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01015 - - - cpep:111797188 2736.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01073 Cma09g01015 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01073 Cma-Chr1:7920979 Cma09g01015 Cma-Chr9:5191318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g675 . . . . . . . Bma13g01118 . . Cma01g01073 Cma09g01015 Car01g00949 . Sed07g2762 Cpe06g00823 Cpe02g00825 Bhi09g01779 Tan01g3197 Cmetu01g1493 . . Mch11g1282 . . . . . . . . . . Cone14ag1224 Cone15ag1245 Lsi02g01822 . . . . Blo10g00866 . Bda12g00967 . . . . . Cmo01g01117 Cmo09g01018 . . . . . . . . . . . . . Cla09g02082 Cam09g2170 Cec09g2235 . . . . . . Chy01g01141 Cme01g00895
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006069 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01015 Cma_Chr09 FPKM 2.593923 3.273722 0.749106 1.057626 9.249086 8.267431 8.873056 1.03216 0.894828 0.957278