Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01020 ATGGCTGACGCGAAGTTCAACAAGAAGAAGGGTGTGAAACGGGACGACCTTCCATTGAAAGGGAAGAAGAAGGACGAGCTCTTCACACGTAAACGTTCTCAGGAGGAAGATGATGATTCTGAGATTTCGGATGGTCTGGATGAGGTAGAAGTAGAGAATGGAGTGCTTGATGGTGATGAAGAAGGATCGGAATCTGGTTCTGAAGTTTCTTCTGATGGTGATGACCCTTTGGCCGATGATTTCCTACAAGGAAGTAACGACGAAGAGAATGGTTCAGGCTCGGATTCAGGTTCTGATTCTGATGAAGACATCGAAAACAAGTCGAGAATCATCGATGAAGCGAGGGCGAGGGAAGAAAAAGATGCGGCGGATGAAATGCAGCTCAATATTAGAGAAGAATCCGATGAGTTCAGATTACCTACCAAGGAGGAACTTGAAGAAGAGGCGCTTGGACCTCCCGACCTTTCAAATTTACAAAGGCGTATAAGAGAGATTGTTCGAGTTCTTACGAATTTCAAGGCTTTGAGGCAGGAGGGAGCAACCCGTAAGGATTATGTTGAACAACTTAAGAAAGATCTTTGTTCATACTATGGGTATAACGAATTTCTTATTGGGGTGCTAGTTGAGATGTTTCCAGTTGTTGAGCTAATGGAACTTATTGAAGCCTTTGAGAAGCCTAGACCAATATGTTTGCGGACTAACACCTTAAAGACGAGAAGGCGGGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTCGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATCGGAGCGACTCCGGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCCGTGATGGCCCTTGCTCCTCAGGAAAAAGAACGAATCATTGACATGGCGGCAGCACCTGGTGGTAAAACTACATACATAGCGGCACTTATGAAAAATAGTGGACTAATATTTGCAAATGAGATGAAAGCACCAAGACTGAAGTCACTCACTGCAAATTTACAGCGGATGGGAGTGACAAACACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCGAAAGTATTAGGCAAGAACACGGTCGATAGAGTTCTGTTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGACGAATCTGTTAAAACCTCAAAAAGCTTAGAAGAAATCCAGAAATGTGCTCAGTTGCAAAAGCAACTTATACTCGCTGCAATCGACATGGTCGATTCACATTCAAAATCTGGGGGATATGTTGTGTACTCCACATGCTCCATCATGGTTGATGAGAACGAAGCAGTTGTTGACTATGCACTTAAAAAGAGGGATGTGAAACTTGTGCTATGTGGCCTTGATTTTGGACGTCCCGGGTTTATTCGGTTCAGGGAAAAGCGTTTTCACCCATCTTTAGAGAAGACGAGACGTTTCTACCCCCATGTCCACAACATGGATGGGTTTTTCGTGGCAAGGTTGCAGAAAATGAGCAACAATATTCCAACTGCTCAATCTTCAGAATTATTGGAAGAGACCGTGGAATATGACAGCGAGTCAGAGAAGAGCGGAAATGAAAAGGATGAAGGCGAATGTCTCCACCCGAAAGTTAGCGACGGGAGAAAGAGGAAGAAGGTTTCGAAAAACCACGACGATGAAAATGGCGAAGAAGAATCCAAACCCGCTGTTGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATCTCAAAAGCTAGGGAGGAAAAACGACAAGCTTTGAGGGAAAAGAAAACTGGGAGCAAGAAAGAGTAA 1830 44.1 MADAKFNKKKGVKRDDLPLKGKKKDELFTRKRSQEEDDDSEISDGLDEVEVENGVLDGDEEGSESGSEVSSDGDDPLADDFLQGSNDEENGSGSDSGSDSDEDIENKSRIIDEARAREEKDAADEMQLNIREESDEFRLPTKEELEEEALGPPDLSNLQRRIREIVRVLTNFKALRQEGATRKDYVEQLKKDLCSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGLIFANEMKAPRLKSLTANLQRMGVTNTVVCNYDGKELPKVLGKNTVDRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDSHSKSGGYVVYSTCSIMVDENEAVVDYALKKRDVKLVLCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVARLQKMSNNIPTAQSSELLEETVEYDSESEKSGNEKDEGECLHPKVSDGRKRKKVSKNHDDENGEEESKPAVEKRKKRKFPSREEISKAREEKRQALREKKTGSKKE 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5230930 5236490 - CmaCh09G010200.1 Cma09g01020 301025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01020 609 ProSitePatterns NOL1/NOP2/sun family signature. 375 386 IPR018314 GO:0003723|GO:0008168
Cma09g01020 609 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 38 581 IPR023267 GO:0001510
Cma09g01020 609 PANTHER BNACNNG49010D PROTEIN 38 581 - -
Cma09g01020 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 191 507 IPR029063 -
Cma09g01020 609 MobiDBLite consensus disorder prediction 1 106 - -
Cma09g01020 609 Gene3D Vaccinia Virus protein VP39 295 606 IPR029063 -
Cma09g01020 609 MobiDBLite consensus disorder prediction 1 38 - -
Cma09g01020 609 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 215 292 IPR031341 -
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase signature 279 293 IPR023267 GO:0001510
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase signature 308 318 IPR023267 GO:0001510
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase signature 376 388 IPR023267 GO:0001510
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510
Cma09g01020 609 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 231 507 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cma09g01020 609 MobiDBLite consensus disorder prediction 39 68 - -
Cma09g01020 609 Pfam 16S rRNA methyltransferase RsmB/F 296 506 IPR001678 GO:0008168
Cma09g01020 609 Coils Coil 116 136 - -
Cma09g01020 609 MobiDBLite consensus disorder prediction 527 609 - -
Cma09g01020 609 Gene3D Sun protein; domain 3 185 292 - -
Cma09g01020 609 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 219 508 IPR001678 GO:0008168
Cma09g01020 609 MobiDBLite consensus disorder prediction 513 609 - -
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 182 202 IPR023273 GO:0008168
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 215 227 IPR023273 GO:0008168
Cma09g01020 609 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 238 251 IPR023273 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01020 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 967.222
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01067 Cma09g01020 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00818 Cma-Chr3:6218446 Cma09g01020 Cma-Chr9:5230930 5.20E-16 dispersed
Cma07g00556 Cma-Chr7:2384159 Cma09g01020 Cma-Chr9:5230930 1.35E-16 dispersed
Cma09g00354 Cma-Chr9:1462674 Cma09g01020 Cma-Chr9:5230930 1.03E-16 dispersed
Cma01g01067 Cma-Chr1:7891075 Cma09g01020 Cma-Chr9:5230930 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01020 Cma_Chr09 FPKM 7.24056 8.563691 7.914694 8.113649 16.666399 14.279404 17.062027 13.268165 12.759088 13.541331