Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01025 ATGATTCATTCTGGTTTCTTCCTTTCGGGTCCATCGCTTAATTCTGATGCTACTACGTCTTTCATATCGATTCCGGTGTCTGGAGGAGATGGCGCTACGGCGTTGGATGCCATCCCCCCTTCTTTCTGGGTTAAAACAGCCATGAAAGTATCTAGAGCCAGATGGTTTATTTTCTTGAGAAGAGTTTTCCATTACCAAAACGGATCGAGATCTGATCTCGGGCCAAATCCTTTTGATTCGGGTTCGTGGATGGTGATGGAACTTGTAGCTCTGTTATTTCAGCTAATCATCTCAGTGATTACTCTTGCCATTTCACAGATTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGGTTCTCTATGGCCGCCATCGGTATCGTTATCGTTATCGAATCCAGGGAGATGGGAACAGTATTTCGGATATCGAACACGAACAGCAGAGGAGTAATGAATCATCAAGGTACTCACATTTGATGAACAAATGTCGCACGTCTCTTGATCTTTTCTTCGCGATATGGTTCGTAATGGGAAATCTTTGGGTCCTCGATTCTCGCTTCGCCTCGTTCGAAAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATATCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTTTGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTGGACGATCAAATCTCCCAGCTACCTTACTGGAGATACCAAGCAGTCCACGCCGACATCAACCCCAAAAGTCGACCCGATAACAGCCATACGGGACTTCCAAAAGACGACCCAGAATGTTGCATTTGCCTTGCTAAGTACATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTGCATCTTCATGCCCTCTCTGTAAGCAACAACTTCAGAGATAA 1029 44.51 MIHSGFFLSGPSLNSDATTSFISIPVSGGDGATALDAIPPSFWVKTAMKVSRARWFIFLRRVFHYQNGSRSDLGPNPFDSGSWMVMELVALLFQLIISVITLAISQIERPVWPMRLWIGGYDLGCVLSLLVLYGRHRYRYRYRIQGDGNSISDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWVLDSRFASFERAPKLHLLCSFLLVWNIICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPYWRYQAVHADINPKSRPDNSHTGLPKDDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAIASSCPLCKQQLQR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5266679 5268407 + CmaCh09G010250.1 Cma09g01025 301030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01025 342 Pfam Ring finger domain 295 337 IPR001841 -
Cma09g01025 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 341 IPR013083 -
Cma09g01025 342 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Cma09g01025 342 SUPERFAMILY RING/U-box 291 340 - -
Cma09g01025 342 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 35 341 - -
Cma09g01025 342 CDD RING-H2_RNF111_like 294 337 - -
Cma09g01025 342 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 341 - -
Cma09g01025 342 SMART ring_2 296 336 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01025 Cma-Chr9:5266679 Cma12g00304 Cma-Chr12:1550578 1.25E-53 dispersed
Cma09g01025 Cma-Chr9:5266679 Cma09g01026 Cma-Chr9:5270586 4.34E-169 tandem
Cma01g01063 Cma-Chr1:7869119 Cma09g01025 Cma-Chr9:5266679 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01025 - - csv:101217150 590.882