Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g01026 | ATGATCAATTCTGGTTATTTCATTTCGGGGCCTTCATGTAACTACAATGGCACTGCTTCCTTTATCTCGAATTCACTGGTGGAAGAAGAAGGTGCAGGTGCAGATGTTAGAGATGACAATTCTGTTTCTCTCCCTGCATCTTTCTGGGTTAGGGTAGCAATGAGGGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGAGTATTTCACTACCAGAATGGATCAAGATCAGATCTCGGGTCCGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAACTGATAGCTATGGTGCTTCAGCTGGCCATCACTGTGTTTTTTCTCGCCATTTCAGAGACAGAGAAGCCTGTTTGGCCTATGAGATTGTGGATAGTTGGTTACGATCTTGGCTGCATTCTTAGCTTGTTGCTTCTCTACGGACGATATTGGCACGTTTATTTAATGCGTGGAGAGCGCGTTGGCCTTCCCGACATCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGCTTGATGAACAAATGTCGGTCGTCTCTTGAACTTTTCTTTGCCATATGGTTCGTAATGGGCAACGTTTGGATCGTTGATTCTCGCTTCGGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGCGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCTTGTCCATTCATACTTTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTCTCGGGTATAACATTAACATGGCATCGACCGACAAAGGCGCATCAGATGATCAGATATCCGAGCTACCTTGCTGGAGATATAAAGCAAGCTCAAAGCAAGCTGATAGTAACAACAAAGGGCTTCCAAAGGAAGATCCAGAATGTTGCATTTGCTTAGTCAAATACAGAGATGAAGAAGAAGTAAGAGAGTTGCCTTGTTCGCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCCATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTTCAAAGATAA | 1017 | 44.74 | MINSGYFISGPSCNYNGTASFISNSLVEEEGAGADVRDDNSVSLPASFWVRVAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELIAMVLQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHVYLMRGERVGLPDIEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFGSFQRAPKLHLLCVFLLVWNAICYSCPFILFLLLCCCVPLISSLLGYNINMASTDKGASDDQISELPCWRYKASSKQADSNNKGLPKEDPECCICLVKYRDEEEVRELPCSHLFHLKCVDKWLSITSSCPLCKQQLQR | 338 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5270586 | 5273381 | + | CmaCh09G010260.1 | Cma09g01026 | 301031 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g01026 | 338 | SMART | ring_2 | 292 | 332 | IPR001841 | - | |
| Cma09g01026 | 338 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 26 | 337 | - | - | |
| Cma09g01026 | 338 | SMART | ringv_2 | 291 | 333 | IPR011016 | GO:0008270 | |
| Cma09g01026 | 338 | CDD | RING-H2_RNF111_like | 290 | 333 | - | - | |
| Cma09g01026 | 338 | Pfam | Ring finger domain | 291 | 333 | IPR001841 | - | |
| Cma09g01026 | 338 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 26 | 337 | - | - | |
| Cma09g01026 | 338 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 337 | IPR013083 | - | |
| Cma09g01026 | 338 | ProSiteProfiles | Zinc finger RING-type profile. | 292 | 333 | IPR001841 | - | |
| Cma09g01026 | 338 | SUPERFAMILY | RING/U-box | 284 | 336 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01063 | Cma09g01026 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01063 | Cma-Chr1:7869119 | Cma09g01026 | Cma-Chr9:5270586 | 3.19E-179 | dispersed | |
| Cma05g00645 | Cma-Chr5:3264376 | Cma09g01026 | Cma-Chr9:5270586 | 1.96E-52 | dispersed | |
| Cma09g01026 | Cma-Chr9:5270586 | Cma12g00304 | Cma-Chr12:1550578 | 2.32E-55 | dispersed | |
| Cma09g01025 | Cma-Chr9:5266679 | Cma09g01026 | Cma-Chr9:5270586 | 4.34E-169 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g01026 | - | - | bhj:120085372 | 614.764 |