Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01029 ATGAAATCAACGCCGTCTCTCTTCTCCTCCATTCCGATCTTCGGTTGTGAAATCAACGGCGATTCGATCCACCGGATCCCTGTATTCATCCCACAATCCACTGAATCCCTTCACTTTCTTTTTATTCTTGTTGCTATGGGAAAGAGAAGAGAGCGTCGACGTGCAGCTCTAAGCAACGCCGGTCGCCGTGTCAAGCTTGATCTATTCGCCGAGCCCTCCGGAGATTTAGATGGCTCTGATGCACATGAAGAAGTTGGAGGGGATATAGATTCAAGACAGACAACCAAGTTACCTAAATCAGCATCCTCCTCAGGTCAACAAGCACAAAATCCCTTGCTGTTACTGGAGCAATATAGTGATGATGAAGTTGATGAGGACTCCAATAAAAATTCAGATCATGATGGACAAGATGCGTTGTTACCTGACTGCAATGACGAGGTTGCTGCCCTTCTTGCTGAGGGATGTGAGAAAGTGGAGGCAAATGTCGGTGAAGACATCATTGCTGAAAAGGCTGTTCAAGAGGAACCCGAGCGAGGTTCTGCTGAATTTTCTGAGAACCTGGAGAGCAAAGATGAAGCAAAAACTGACACTAATAACTTGGGATATTTAAGCAAGGAAACGGATGTGGTTCAAACATCTGTACCAGCCACATCTATTGTACAAGTATCAGGGGATGTTATTTCAGGATGGAGGGTTGTCATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTTCCTGATGTCGTTTTGGCTCAGACTCAGCCTACTCTATCAGCCACTGACGTTATAACTTCTCCAACTCAATTTCCAGAGAACGTTACAGTATTTAAACAGGATTCTGGCTTATCTAATGGTGGGAGGTTAGATGCTTTTTCAGCAGAAAGCACAGGTTACAAGAACGGCGTTCCAGTTACTGCAAGTCAGGGTTCCGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAACAATGTGAATATCGCAAAAGCTGCTTCTGAGATCTATGCTGATTACGCGGTGACTAATGAGGAACAGAAATCAGGGTTGGATCTTCCTTCACATCTTCTGAACTGGAGTTCGAGCTTGTTAGAGAGATTAAAATCATTACAGAAGTCTGGGGGTCATGAATGGACATTAAAGTACATATTGGAAACTCAGGTTAGACTTTCGGATTTGGAGTCGCTGATGCCGTATAAGGCATCGTTGCTTCCATTCTGGGAACACTTGGCAAGGAAACTTAGACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGTTGTTGTATCGTCGCAATTGGATGAAGCCAAGATTACTGATAGTCCAAACATTGTAAGAAACGAGAAATTTCAGGGAATGTCGGATGTTGCGTCTGATGTTGCGAGAATGGAAAATAGTGGGATTTCTGCTTTGGAGCATTCTCATTTGCCTACTGATTCTGCTTCTTTGACTATCATTGCAAATGGAGAAAATATTTCACCGTCTAATGGAGAAAATATTTCACCGTCTAAGGGGAACTCTACTAGTGTGATTGACCATGCAAGTGAAATTGCAATTGATGAAATGGCTTCCAAGAGTGAACATTCTGTGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCGGTTTTGCAGGTAGCTTGACGGTGGCTGGTACACCAGATATATACAATGCTAAGTCATTTACTTCGTTCGAGCAACCACTTCAGCCAGATCAACAAGCCCAGCCAAATCTTTCTTCTGGCTTTGCATACATGGGGCACGAGGATGGCAGTGTAGCACCACCGCCACCACCAGCGGACGAAGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAACCAGCTGAACCATTATATCATATGCCTCCATCTTATACCCAACTTGGGCAGCCTGTTTGTTACACTGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTCAGTATTATGCACATCCTGTCCCTGAAGTTGTACCTAGTGCAGATTTTTACGGACATCCAGAAGCATGTAACGTTGTATTGGCTCAAGCACCATTTTGCTATGAGGCAGTTCCCAATTCGCATACGGGTTCTGCTCCCCTAGTTGTAAATGGTGTTGTGCCTGAAGGTTATGGTATTCTTCAAAACGCAACGTCCTCTCTTTCCATCTTTAGTACTGCTGGGTCGTCTCAGTTGCATGTTGATTCTGCATCTGTGAGTTTTGATCCTTCTTTCACTTTTCATTATGGATCTTCTGATACTGCAAGTATGAATACTGCTTCTGCCGCTGATGAAATTGACAAGGGGTGTGGAGACACGAAAGCCTCCGTCCGAGTATCTACTTCAGTCTCCCCAACTAACGATGTTCCGCCAACAAGTAATGCCGTTACTGATCCTTCAGCTGTTGCTAATACAACTGCAATTTCCAAGGTTCAACCAAAAGCTCTGCGCAGTAAAAAGCGGACAGTTGCGGTTGCTCCATCCTTGAGATCGAATAAGAAAGTTTCGAGTTTGTTGGACAAGTGGAAGGCAGCGAAGGAAGAACTGGAAGAAGACGAGGAAGAACCAGAAAATGCATACGAGATTCTCGAGAGGAAACGAGAAAGAGAAATAAAGGAATGGCATGCACAGCAAATTGCCAGTGGAGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGCGGTGATTGGCGCGAGCGTGTAAAGCGAAGGAGAGCGCAATCATCGAGTGACGTTACTCAATCCCCTGCTGAAGCATCCACAGATGGAAACCAGCAGCAGCCCGACCTGGCAGAAATTGCAAAAGATCTCCCCTCAGGATGGCAGGCATATTGGGACGAGTCAACGAAGCAGGTGTATTATGGTAACGTTAACACTTCGGAAACGTCGTGGACAAAACCAAGGAAGTGA 2958 44.69 MKSTPSLFSSIPIFGCEINGDSIHRIPVFIPQSTESLHFLFILVAMGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDIDSRQTTKLPKSASSSGQQAQNPLLLLEQYSDDEVDEDSNKNSDHDGQDALLPDCNDEVAALLAEGCEKVEANVGEDIIAEKAVQEEPERGSAEFSENLESKDEAKTDTNNLGYLSKETDVVQTSVPATSIVQVSGDVISGWRVVMHEESHNYYYWNVETGETSWEVPDVVLAQTQPTLSATDVITSPTQFPENVTVFKQDSGLSNGGRLDAFSAESTGYKNGVPVTASQGSEVDQSYAAFSTCSNNVNIAKAASEIYADYAVTNEEQKSGLDLPSHLLNWSSSLLERLKSLQKSGGHEWTLKYILETQVRLSDLESLMPYKASLLPFWEHLARKLRQIEDDINKEIYQTVVVSSQLDEAKITDSPNIVRNEKFQGMSDVASDVARMENSGISALEHSHLPTDSASLTIIANGENISPSNGENISPSKGNSTSVIDHASEIAIDEMASKSEHSVEDVDMEVDMEVEDAGFAGSLTVAGTPDIYNAKSFTSFEQPLQPDQQAQPNLSSGFAYMGHEDGSVAPPPPPADEEWIPPPPPDNEDVPPPPPDEPAEPLYHMPPSYTQLGQPVCYTEPYQVSYPDSSIQYYAHPVPEVVPSADFYGHPEACNVVLAQAPFCYEAVPNSHTGSAPLVVNGVVPEGYGILQNATSSLSIFSTAGSSQLHVDSASVSFDPSFTFHYGSSDTASMNTASAADEIDKGCGDTKASVRVSTSVSPTNDVPPTSNAVTDPSAVANTTAISKVQPKALRSKKRTVAVAPSLRSNKKVSSLLDKWKAAKEELEEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSDVTQSPAEASTDGNQQQPDLAEIAKDLPSGWQAYWDESTKQVYYGNVNTSETSWTKPRK 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5277219 5285408 - CmaCh09G010290.1 Cma09g01029 301034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01029 985 ProSiteProfiles WW/rsp5/WWP domain profile. 951 985 IPR001202 GO:0005515
Cma09g01029 985 ProSitePatterns WW/rsp5/WWP domain signature. 957 983 IPR001202 GO:0005515
Cma09g01029 985 MobiDBLite consensus disorder prediction 124 140 - -
Cma09g01029 985 SMART ww_5 952 985 IPR001202 GO:0005515
Cma09g01029 985 SMART ww_5 225 258 IPR001202 GO:0005515
Cma09g01029 985 MobiDBLite consensus disorder prediction 169 194 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 501 520 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 606 640 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 71 110 - -
Cma09g01029 985 SUPERFAMILY WW domain 224 256 IPR036020 GO:0005515
Cma09g01029 985 PANTHER OS06G0298400 PROTEIN 46 984 - -
Cma09g01029 985 ProSitePatterns WW/rsp5/WWP domain signature. 230 256 IPR001202 GO:0005515
Cma09g01029 985 MobiDBLite consensus disorder prediction 582 640 - -
Cma09g01029 985 Coils Coil 848 882 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 121 140 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 924 944 - -
Cma09g01029 985 SUPERFAMILY WW domain 950 984 IPR036020 GO:0005515
Cma09g01029 985 MobiDBLite consensus disorder prediction 93 110 - -
Cma09g01029 985 MobiDBLite consensus disorder prediction 76 90 - -
Cma09g01029 985 Gene3D - 949 985 - -
Cma09g01029 985 CDD WW 954 984 IPR001202 GO:0005515
Cma09g01029 985 Pfam WW domain 953 983 IPR001202 GO:0005515
Cma09g01029 985 Pfam WW domain 228 256 IPR001202 GO:0005515
Cma09g01029 985 ProSiteProfiles WW/rsp5/WWP domain profile. 224 258 IPR001202 GO:0005515
Cma09g01029 985 CDD WW 228 257 IPR001202 GO:0005515
Cma09g01029 985 MobiDBLite consensus disorder prediction 893 951 - -
Cma09g01029 985 Gene3D - 225 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01029 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1337.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01060 Cma09g01029 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01060 Cma-Chr1:7844159 Cma09g01029 Cma-Chr9:5277219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01029 Cma_Chr09 FPKM 10.920243 11.815125 15.490547 14.008896 11.529097 12.38605 10.793332 18.338289 16.85158 16.009928