Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01030 ATGGGAGTTCTCTCGTTCTGGAGCTTGTTTCGCTCTCCTTCCGCCGTCAAATTTCCTAGTTTCCACAAAACCATTTACATGGCTGATGAAGTATCCATATCCAAGCATCATATGGTCAATCACGTAGACTTTTTTTCTGTCAAACGATTTCCAAGAAGGCTGTTCTCGCAGTTCATTGGTTCGTATCCCATCTTGTTATATGCAAATCCTAGTTTCGGTGCACCGATGATGGACGTGCAAGAACCGGAAATAGTTCGGACGCTAAAGCTCGACAGTGGAAAGTTTTTGAGGGAGATGGAGCAGAAGCACATGAAGGAGATTTGGTGGAGTTCAATTATGTCTGCAGGCGTTCAAATGGATATTTCCACGGTAGATCAATTCAGTGGAGAAAGCACACCAGTAATCCTGCCTTTGAAAGAAAACCAGATAATAGAGGGCTTGAAAGAGGTTCTGGTTGGCATGAGAGTTGGAGGGAAAAGAAGAGCACTTATCCCTCCTTCTATGGGTTACATAAATGAGAATTTGAACCCAATTCCTGAAGAGTTTGGTCCTCGACGTAGTCTTTTATCGCATCGGAACGAGCCCTTGATATTTGAGGTACAACTTTTGAAAGTTCAATGA 621 43.16 MGVLSFWSLFRSPSAVKFPSFHKTIYMADEVSISKHHMVNHVDFFSVKRFPRRLFSQFIGSYPILLYANPSFGAPMMDVQEPEIVRTLKLDSGKFLREMEQKHMKEIWWSSIMSAGVQMDISTVDQFSGESTPVILPLKENQIIEGLKEVLVGMRVGGKRRALIPPSMGYINENLNPIPEEFGPRRSLLSHRNEPLIFEVQLLKVQ 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5286192 5292720 + CmaCh09G010300.1 Cma09g01030 301035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01030 206 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC 38 98 - -
Cma09g01030 206 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-1, CHLOROPLASTIC 121 205 - -
Cma09g01030 206 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 38 98 - -
Cma09g01030 206 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 121 205 - -
Cma09g01030 206 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 102 206 IPR001179 GO:0003755
Cma09g01030 206 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 122 203 IPR001179 GO:0003755
Cma09g01030 206 SUPERFAMILY FKBP-like 126 205 - -
Cma09g01030 206 Gene3D - 94 206 IPR046357 GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01030 - - - mcha:111010395 283.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01030 Cma-Chr9:5286192 Cma13g00433 Cma-Chr13:4880711 3.53E-09 dispersed
Cma09g01030 Cma-Chr9:5286192 Cma14g01395 Cma-Chr14:10769116 1.82E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g723 Blo03g00496 . Bda07g00424 . . . . . . . . Cma09g01030 . . Sed04g3622 Cpe06g00837 . Bhi09g01806 Tan01g3222 Cmetu01g1457 . . Mch11g1305 . . . . . . . . . . . . Lsi02g01807 . . . . . . . Bpe11g00599 . . Bma14g00669 . . Cmo09g01032 . . . . . . . . . . . . . Cla09g02098 Cam09g2184 Cec09g2251 . . . . . . Chy01g01119 Cme01g00861
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004304 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 2 9 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01030 Cma_Chr09 FPKM 0.0 0.609393 3.721823 4.313167 19.3682 23.005947 22.378038 8.211857 8.455146 9.568839