Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01031 ATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGTCCTCTTCGTTGCTAGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTCGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTTCCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTCATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTTGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCCATGGGGCTCCACAACTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGCGGGTCTACTGGGATGAAGTTTTTGTCATCCGCACTTATTATTAGCTACAGGCACCATTCTTTGTGTTCTTCTCTGGTTGTTTCATCCCCATTATCATATTCACTGAGCTATTCAGCAACTGTAGATGAAGATGGTGTGAAGGCCTTGGGGCATTGTTGTTATTTTCTTCCATCACAATTTGAGGCACAAGAGAATGAAACTAGATTACTTCATCTCACTTCTTTCTTATCGGAGAAAAAAAACCATATTCCCGTATTAAGAACTAAGAACCAAACCAGAGAAGGAATAGAGAGAAGGAATAGAGAGAAGGATCTTGAATTCACGTACCTCTGTTCTTCTTTTTCTTCTTCTCCTATAAACAAAACATGGATTTCCCCTTTGTTCAATCCAAATCAGATCATTTTGTATCATAAGTTATCAAGAAGAACAATGGCTGCAATTCTAAGGAATCCCTTAATTCCTTCTCAATTCTTCACCATAGCCTTGATTTTATTACTAAGTATCCGTCTCTTTCCATGTTGTTACTCCATTGATGAGCAGGGTAGAGCTCTTCTCACATGGAAGAGTAATCTAACAAGCTATACAGATGCTTTGAGTACATGGAATCCGGAGGACCCGACACCGTGTTCATGGTTTGGAGTTGTCTGCGACTCCCATGGATATGTAGTGGAGATAACCCTGGCAGCACTGGATTTGCGAGGTACATTGCCATCGAATTTCCAGGCTCTTAAGTTCTTGAGGACCCTGGTGATATCTGAGACGAATATAACAGGAAGAATCCCGAAAGAGTTTGGAGATTATAAGGAGCTCAGAGTTCTTGATCTTAGCCAAAATAACCTTTTGGGAGAAATCCCAGAAGAGATTTGCAGGCTGGGGAAGCTGGAGGATTTGTCCCTTCAAAGCAATGGGTTTGAAGGGACAATACCGGTAACGATTGGGAATCTTTCGAACCTCGTGTATCTCAGACTCGCAGACAATGAAATCAGTGGGGAGATTCCAAAGAGCATTGGAATGTTGCAGAAGCTTAATCTTTTCAGAGCTGGAGGGAATAAACTTCTTGAAGGTAAATTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGTCATGTTAGGCCTAGCCGAAACCGGAATCTTCGGAGCTCTTCCTTCATCGATTGGGATGCTGAAAAACATACAGAACATAGTCATATATAAAGCACAACTTTTCAACACAATCCCGGAAGAGATCGGAAACTGCAGTGAGTTGCAAACTCTTATATTGTATCAGAATAGCATTTCTGGGCGGATACCTAGAGGAATTGGGAAGCTGAAAAAGCTTCAAACACTTTTTCTATGGTTGAACTTGTTGGAAGAATCTATACCAGAAGAGATTGGAGATTGCGAGGAACTTGTAATCCTAGACGTTTCCGAAAATCTTCTAAATGGAACCATACCAAAAAGTATAGGACGGCTACCTAAACTTCAAGAGTTTCAACTAAGTCTTAATCAGATTACGGGTTCAATACCTTCGGAAATGTTTGATTGTTCGACTTTGGTTCATGTGGAAGTAGACAACAACAAACTTTCGGGCGAGATACCGATTTCAGTAGGCAACCTGAAGAACTTGCATTTATTTTTTGCTTGGGAGAACAAATTAACAGGCAGTATTCCCAGCACTCTCTCAGACTGCCTTGATCTCCAGGCCATTGATTTCTCGTACAATCACTTGACGGGTTCAATACCAAAAGAGATTTTCGGTTTGAAAAATCTCACGAAACTTCTTCTCATACGAAATAATCTATCGGGGATCATTCCACCTGAAATAGGACATAGTAGGACACTATCGAGGTTTCGATTGGCTAAGAATAGGTTTGGAGGTACTATTCCATCAGAGATGGGATATTTGAAGAGCTTAGATTTTCTGGACTTAGCTGAAAACCATTTTGTTGGAGAAATTCCTCAATCGTTATCGAACTGTGACGTTCTTCAGTTTATTGACCTCAGTTCAAATGAGTTCACTGGTACTCTTCCAATCGAACTGCCGATGAGCCTACAGTTTTTAAATATATCCAACAACAGGCTTGAAGGTCAGGTCAACCCGGGCATCGGAGCTTTGACGGAACTAACAAAACTTGACCTGAGAAACAACCAACTTTCAGGGAAAATCCCAGCAGAAATTGTTTCCTGTCAAAAGCTTCAATTTTTAGACCTCAGCAACAATTTCTTTTCTGGGGAACTCCCTAAGCAATTAGGTATAATTTCTTCACTTGACATTGCTCTTAATCTAAGTTGGAATCATTTCTCAGGTGAAATCCCATCCGAATTCTCTGGTCTCGTCCGGCTAAGTATTCTAGACCTCTCCCATAACAACCTCTCTGGGGACCTAAGCCTTCTTGTAGAGCTTGAAAACCTTGTGACTCTAAACATCTCCTACAACCACTTCTCCGGCAAATTGCCCGACACACCATTCTTTCAAAAGCTCAGTAAAAGCGCCATTGCTGGAAACAAAGACCTCTATGTTTCAGGTGAGCAAGTAATTCCTGAAGGCAAGTTTGGATCCAGAAACGTAAGCAAAGAAGCAATAAAGATAGTCCTGCCAATCTTGATCAGCATAAGTGCAGTGCTTTTCTTTTTAGTGATCTACTTGCTAATTCGCACACAAATGGCTAATTTCATGCTACTGATAGATGGCGATAAATGGGAAATAACCCTGTTTCAAAAACTTGATATCTCAATCGACTACATCATTAAAAACTTAACTGAATCCAACGTGATCGGTGCTGGAAGCTCCGGTGCCGTGTACAGAATCACAACCCCAAAAGGGAAAACAGTGGCAGTGAAGAAAATGTGGTCAACCGACGAATCTGGAGGCTTCAACTCTGAAATCCGTACTTTAGGATTAATTCGACATAAGAACATAATAAGGCTGCTGGGTTGGGGATCCCACAGGAATTTGAAGCTCCTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCTTTTATCCATGACGCTGGAAAAGAAGGAGCAGAATGGGAGGCCAGATACGAAATCCTCTTAGGAGTGGCTCATGCTCTAGCATATCTTCACCATGATTGTACTCCACCAATCGTACATGGCGATGTGAAAACACTGAATGTTCTGCTCGGCCATGACTTTGAGCCATACCTAGCCGACTTTGGTCTCGCCAGCAATGTGAGTACAAACAACGGCAATGATTCTTCAAAGAAGCCAATACTCAGACAACTTGCTGGCTCTTTCGGGTACATGGCCCCAGAACATGGGTCGATATTGACAGTCTCAGAGAAGTGCGATGTGTACAGCTTCGGTATAGTGGTAATGGAGGTTCTAACAGGGCGGCACCCTCTGGACCCGACTTTACCAGGAGAAGGCAATTTGGCGCAATGGGTTAAAGACCATTTAGCCACAAAGAAAAACCCAGCCGACATTTTAGACTCGAAGCTCAGAGAAAGAACCGAACCCACAATGCGCGAAATTCTTCAAACCCTAGACGTCGCGGTGATCTGTGTCAGCGTCAAGTCCGACGATCGACCCCCCATGAAAAGTATAGTCGCCATGCTCGAGGAGATTCGAAGTGTTGAATTGGGGAAAGCGGCTGCCGATGACCCCAAGCCGGTGATGATTCAATCGACCCTGCAGAGGAAGTTTTCGTCTCAAGGATCTTTGTATTGCAAATCTCATTTGTAG 4311 42.7 MLKTAQGWFTQGDSSGSDNQVKPSSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATGVFFIFIAFALFLPIMVLVPHKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHNYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALIISYRHHSLCSSLVVSSPLSYSLSYSATVDEDGVKALGHCCYFLPSQFEAQENETRLLHLTSFLSEKKNHIPVLRTKNQTREGIERRNREKDLEFTYLCSSFSSSPINKTWISPLFNPNQIILYHKLSRRTMAAILRNPLIPSQFFTIALILLLSIRLFPCCYSIDEQGRALLTWKSNLTSYTDALSTWNPEDPTPCSWFGVVCDSHGYVVEITLAALDLRGTLPSNFQALKFLRTLVISETNITGRIPKEFGDYKELRVLDLSQNNLLGEIPEEICRLGKLEDLSLQSNGFEGTIPVTIGNLSNLVYLRLADNEISGEIPKSIGMLQKLNLFRAGGNKLLEGKLPMEIGNCSSLVMLGLAETGIFGALPSSIGMLKNIQNIVIYKAQLFNTIPEEIGNCSELQTLILYQNSISGRIPRGIGKLKKLQTLFLWLNLLEESIPEEIGDCEELVILDVSENLLNGTIPKSIGRLPKLQEFQLSLNQITGSIPSEMFDCSTLVHVEVDNNKLSGEIPISVGNLKNLHLFFAWENKLTGSIPSTLSDCLDLQAIDFSYNHLTGSIPKEIFGLKNLTKLLLIRNNLSGIIPPEIGHSRTLSRFRLAKNRFGGTIPSEMGYLKSLDFLDLAENHFVGEIPQSLSNCDVLQFIDLSSNEFTGTLPIELPMSLQFLNISNNRLEGQVNPGIGALTELTKLDLRNNQLSGKIPAEIVSCQKLQFLDLSNNFFSGELPKQLGIISSLDIALNLSWNHFSGEIPSEFSGLVRLSILDLSHNNLSGDLSLLVELENLVTLNISYNHFSGKLPDTPFFQKLSKSAIAGNKDLYVSGEQVIPEGKFGSRNVSKEAIKIVLPILISISAVLFFLVIYLLIRTQMANFMLLIDGDKWEITLFQKLDISIDYIIKNLTESNVIGAGSSGAVYRITTPKGKTVAVKKMWSTDESGGFNSEIRTLGLIRHKNIIRLLGWGSHRNLKLLFYDYLPNGSLSSFIHDAGKEGAEWEARYEILLGVAHALAYLHHDCTPPIVHGDVKTLNVLLGHDFEPYLADFGLASNVSTNNGNDSSKKPILRQLAGSFGYMAPEHGSILTVSEKCDVYSFGIVVMEVLTGRHPLDPTLPGEGNLAQWVKDHLATKKNPADILDSKLRERTEPTMREILQTLDVAVICVSVKSDDRPPMKSIVAMLEEIRSVELGKAAADDPKPVMIQSTLQRKFSSQGSLYCKSHL 1436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5293924 5303276 + CmaCh09G010310.1 Cma09g01031 301036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01031 1436 ProSitePatterns Protein kinases ATP-binding region signature. 1126 1149 IPR017441 GO:0005524
Cma09g01031 1436 Gene3D Transferase(Phosphotransferase) domain 1 1194 1413 - -
Cma09g01031 1436 Gene3D Phosphorylase Kinase; domain 1 1104 1193 - -
Cma09g01031 1436 Pfam Protein kinase domain 1122 1336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01031 1436 ProSiteProfiles Protein kinase domain profile. 1120 1398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01031 1436 Pfam Got1/Sft2-like family 95 207 IPR007305 GO:0016192
Cma09g01031 1436 Pfam Leucine Rich Repeat 478 499 IPR001611 GO:0005515
Cma09g01031 1436 SMART serkin_6 1120 1376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01031 1436 ProSiteProfiles Leucine-rich repeat profile. 981 1003 IPR001611 GO:0005515
Cma09g01031 1436 SUPERFAMILY L domain-like 667 1033 - -
Cma09g01031 1436 MobiDBLite consensus disorder prediction 1 23 - -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 781 880 IPR032675 -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 581 685 IPR032675 -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 495 580 IPR032675 -
Cma09g01031 1436 SMART LRR_typ_2 475 499 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 906 930 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 788 812 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 692 716 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 644 668 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 836 860 IPR003591 -
Cma09g01031 1436 SMART LRR_typ_2 523 547 IPR003591 -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 881 959 IPR032675 -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 960 1045 IPR032675 -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 686 780 IPR032675 -
Cma09g01031 1436 Pfam Leucine rich repeat N-terminal domain 386 425 IPR013210 -
Cma09g01031 1436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1238 1250 IPR008271 GO:0004672|GO:0006468
Cma09g01031 1436 SUPERFAMILY L domain-like 409 749 - -
Cma09g01031 1436 Gene3D Ribonuclease Inhibitor 387 494 IPR032675 -
Cma09g01031 1436 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 365 1409 - -
Cma09g01031 1436 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 365 1409 - -
Cma09g01031 1436 SUPERFAMILY Protein kinase-like (PK-like) 1112 1396 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01031 Cma-Chr9:5293924 Cma11g00083 Cma-Chr11:405029 0 dispersed
Cma18g01312 Cma-Chr18:10069628 Cma09g01031 Cma-Chr9:5293924 4.24E-13 dispersed
Cma20g01043 Cma-Chr20:7682709 Cma09g01031 Cma-Chr9:5293924 1.00E-11 dispersed
Cma01g01059 Cma-Chr1:7835254 Cma09g01031 Cma-Chr9:5293924 3.52E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68811 PF00069 Pkinase 5.20E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01031 - - mcha:111010465 1431.0