Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01033 ATGCCGCAGGAATTAAGCTTCAGGAATTCGATTTTAACGTCTCCGAACAAGAATATTCCGAGAGGATTGAAGGCTCTGGTTACGAATTGTAATGCTCAGGTTTCTTCTACTTCTGTGATTTCTGAGGAGGTTATCAATGATCATGAATTGGCTCAACGCAAGGCCGAAGAAGCTGCATTTAGGAGGAATCAAGCGGCAGGATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTACTATCGAAGGAGCCCTCCGAAGAAGAATTCTGTCTTGCACTTCGCAATGGTCTTATTCTCTGCAATGTCCTCAACAAAGTCAATCCTGGTGCTGTTCTTAAGGTGGTGGAGAGTCCAGTTGTAACTGTACAGTCAGTAGAAGGAGCAGCACAATCTGCAATTCAATATTTTGAGAACACGAGGAACTTCTTGGAGGCGGTTAAAGACATGAAGCTCTTGACGTTTGAAGCTTCTGACTTGGAAAAGGGAGGTACTTCAGGAAAAGTTGTAGAGTGTATTCTCTGCTTGAAAGGATATTATGAGTGGAAGCAAGCTGGTGGGATTGGGGTTTGGAGATATGGAGGAACTGTACGGATCACATCTCTTGCCAGAAGTTCACCTTCCATAACTGAAAGTGATAGTACAGATGAATCGGATTCGTCTCAGTTTGAGCAGCTACTAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCCAGAACTTGCAGTGTTCTTGCTTTTCTTTTTGATCGTTTTGGACTTATACTCTTACAAGCATACCTCCGAGAGAGTAATCGGATTGAAGATTTTCCTTTAAATGCAATGGTAATTGATGCATTACTTAGCAAGGTTGTTAAGGATTTCTCTGCACTGCTTGTGTCTCAAGGCACTCAGCTTGGACTCTTTCTGAAGAAAATATTGAAAAGTGATTTAAGTTCATCATCAAAATCTGAATTCATTGAAGCAATATCCCGATACATCAACCAAAGAGCGAATATGGCATCAAGCGACTTCTCGAAATTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCATAGGGCTCCTGCTGACCATGAAGAACTGGTTCATGCTCAACAGAATCAGATTCAGGAGCTAAAATCAGCGTTTCAAGAAACCAAACTTGAAGTTAAACACATACAGTCTCAATGGAATGAAGAAGTTGAAAGGCTAGAACATCATCTCAAGGGCCTTGAGATGGCTTCCTCTTCGTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACGATAAGGGTGTACTGTAGAGTGAGGCCTTTCTTATCGGGACAATCAAACCAGCATTCTACAGTGGACTATATTGGAGAAAATGGGAACATTATGATTGCGAATCCTCTAAAGCAAGGCAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTTTATGGAACTAATGTTACCCAAGAACAAATATATATCGACACTCAACCGTTGATCAGATCCGTTCTTGATGGTTTTAATGTTTGTATCTTCGCATATGGACAAACTGGCTCAGGAAAGACGTATACAATGAGTGGCCCAGATTTGATGACTGAGGACACATGGGGCGTTAACTATCGAGCTCTCAATGACTTATTCCAGATATCAAATGCAAGGTTGGATATGATAAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAGCAAGTGAGAGATCTGTTAGTCAGTGATGGCTCGAACAGAAAATTAGATATACGAAACAACTCTCAACTCAGTGGCCTCAATGTGCCTGATGCAAGTTGGGTTCCTGTGACATGTACTCAAGATGTTCTTGGTTTGATGAGAGTTGGCCAGAAGAATCGAGCTGTTGGTGCTACGGCTTTAAATGAGAGAAGTAGTCGTTCACATAGTGTTCTAACAGTTCATGTACTTGGAAGAGATTTGGTCTCCGGATCCAATCTTAGAGGGTGTCTTCATCTAGTAGATCTAGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTCGGCGACAGACTAAAGGAAGCACAACATATAAACAAATCCCTCTCTGCACTTGGAGATGTGATTTCTGCTCTTGCACAAAAGAGTTCACATATTCCTTACAGGAATAGCAAACTAACTCAACTCTTGCAGGATTCTTTAGGTGGACATGCTAAGACCTTGATGTTTGTACACATAAACCCCGAAGTTGATGCACTTGGAGAGACAATTAGCACGCTTAAGTTTGCTGAGAGGGTTGCCTCTATAGAATTAGGTGCAGCTCGTTGTAATAAAGAAAATGGTCAAATTAGAGAACTTAAAGATGAGATATCAAATCTCAAATCGGCATTGGAGAGGAAGGATGCAGAGCTTGAACAACTAAAAAGTGGAAACGCTCGAGCCTTCGTAGAAAATCCAAAGCCGAGAGCTGCCTCTCCCTCCCGTGTTCTAAGACATGGTACCAATGGAGGTGCTAAGCCTGAAAATTGTCAAAGGCCTTTGGATGAAGCTAAAACTTTGGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGTCAAGATTTCCCTCTACATTCACAGAGAAAGATGCAATAAAAATGCCATTATTAGCTGAAGAGAGATCAACAACAAGTTCCAGCTCTGGAAACCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACCGATCGAGGTGCCTTTATAAGAAGCAAGGTACGAACGGAAACGAACGAAAACCAACCAATATCAAAGCCTTCATTTCCGACGAAAGCGCCCGTTAACAAGTCGATGGCCTCAATTCAAGTAATCGATAATCGAGGAAGAGTAAACATCAGTTCTCAAGAGCATGAAAACGTCTCTGATGCATTGGTTGGTATCCAAAAAACAATGGCTTCAACAAAGAAGAAACAACTGGTTTGCCAAGAAAACAATGAAGATGAACAACAGTTGAAGCAGTCTGTAACTACAATGCAAGGTGGTGCAAGGAGAAGCAAAAATGAAGGGAAAAGCAAAGCAAAGCAACAGCAGATGCCTGGTGTAGCAGCAGCAGCTAGGATTAACAACAAACAGAGGCAGCCTGAGCATGTGGTAACAACATTACTTACTGACATTAATGCTGCTGGAAAAATGGAGGATGCAAGAAAGAGCGACTTCTCTGAAATGGAGAATGAGCATTTTATAGGGGGATTCCCTCTCGATGGTGCTTTGAAGGCGAAGAAAGCTCGTCAGAACTTCCCAAGGAATTCTCAAAATCTGGAACCACAAAGAGTACCTGTTGAAAGTTTACTGACTACCAACAAAGTCGAGAATGAGAGTCACAATCAAAGTGAAGTCACCGACAAATCAATGCCTGAATTTAGGAGTAGATCAATACCTCATGGAAAATTTTTATTCAACGGAAGACTGCATTCGTGCTCCCTTCTCGACCACCACAGCGTTCCAACGGCGACGTCAATCGTTTCTAGGTTTCACAACTCCGACGACGATTTTCGTGAACTCCGTCGACAAATGACAGCCATGGCGGGTTTCAGCGTCCGAGCCTCGATTCAGCTTCAACTTAGAGCTCTTTCAATATCCTGGGTGAAGAAGAGCGGCGTTGTTACTTGCTTGAATGCTAGAGTGTATAGCTCGTCAGGTCCTGTTAGGTATACTCCAAAAAGGTCATTAAATGATAAGAAGTCAAGAACACCTTCGGTACCGGAAATTGTAAATGGAAACGATTTCAGTAGTAAGTTGGATGTTAAATCTCCGAGGATTGAGGTTAAACATCGGGGTGCAGTACGGAGAAGTAATTTTTATGATAAATTTCGTGATCAAAATCCGGACGAGAAGAAAAACTATTCAGCTGGTGGAAGTATGGCAGGACTTGAAGATGAATTTCATGACAATTTGAGCTATGTTGATGATCACTTGCAAGAGCCTAAGGCAGTATGTGAGAAGGAAAATATTTACGGCAAGAAATGTTATGATGGAAAGGTTGATTTGCGGGGAAATAAAAGTAGGCAAGATGCTGAGAAATTGGCAATTGAATTACTTGCAACAAGAGCCTTCACTGCAGTTGGGCTGAGGAAGAAATTGCTTGGCAAGAGGTTCTCTCCGGGCACAGCGGAAGCAGTGATCAATGATTTCAAGAGCAGGGGGTTGATCAACGATGGCCAGTATGCTGAAGGATTTTCTCATTCAAGGTGGTCGTCCTCCAGTTGGGGACCCAGGAAGATCAAGCAGGCACTTATAAACAAGGGGATAGAAGGGGAAGTTGCTCAGAAAGCAATTAAACTTGTTTTTGAAGATGGTGAAGAGTTTGGTGATGAAATGTCAAGTGTGAGTTTGTCAAAGATTTCAATGGATCATTTATTCATTCGAGCCTCGAAACAGTGGCTTCGAGGTCGGGATGCACCGGAAGAGACTAGAAAATCGAGAATAGTTAGGTGGCTTCAATACCGGGGTTTTGACTGGGGTGTTACTAGAACCATTCTTAAGAAGTTAGAAACTGAGTACCCTCCTTAG 4524 42.13 MPQELSFRNSILTSPNKNIPRGLKALVTNCNAQVSSTSVISEEVINDHELAQRKAEEAAFRRNQAAGWLRQMDHGASGVLSKEPSEEEFCLALRNGLILCNVLNKVNPGAVLKVVESPVVTVQSVEGAAQSAIQYFENTRNFLEAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLARSSPSITESDSTDESDSSQFEQLLDFLHLSNEVSVEESRTCSVLAFLFDRFGLILLQAYLRESNRIEDFPLNAMVIDALLSKVVKDFSALLVSQGTQLGLFLKKILKSDLSSSSKSEFIEAISRYINQRANMASSDFSKFCVCGGKREVIHRAPADHEELVHAQQNQIQELKSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLSGQSNQHSTVDYIGENGNIMIANPLKQGKEARRVFSFNKVYGTNVTQEQIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRKLDIRNNSQLSGLNVPDASWVPVTCTQDVLGLMRVGQKNRAVGATALNERSSRSHSVLTVHVLGRDLVSGSNLRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSSHIPYRNSKLTQLLQDSLGGHAKTLMFVHINPEVDALGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSALERKDAELEQLKSGNARAFVENPKPRAASPSRVLRHGTNGGAKPENCQRPLDEAKTLEARSYSSGKQRRSRFPSTFTEKDAIKMPLLAEERSTTSSSSGNPRSPSPPVRRSISTDRGAFIRSKVRTETNENQPISKPSFPTKAPVNKSMASIQVIDNRGRVNISSQEHENVSDALVGIQKTMASTKKKQLVCQENNEDEQQLKQSVTTMQGGARRSKNEGKSKAKQQQMPGVAAAARINNKQRQPEHVVTTLLTDINAAGKMEDARKSDFSEMENEHFIGGFPLDGALKAKKARQNFPRNSQNLEPQRVPVESLLTTNKVENESHNQSEVTDKSMPEFRSRSIPHGKFLFNGRLHSCSLLDHHSVPTATSIVSRFHNSDDDFRELRRQMTAMAGFSVRASIQLQLRALSISWVKKSGVVTCLNARVYSSSGPVRYTPKRSLNDKKSRTPSVPEIVNGNDFSSKLDVKSPRIEVKHRGAVRRSNFYDKFRDQNPDEKKNYSAGGSMAGLEDEFHDNLSYVDDHLQEPKAVCEKENIYGKKCYDGKVDLRGNKSRQDAEKLAIELLATRAFTAVGLRKKLLGKRFSPGTAEAVINDFKSRGLINDGQYAEGFSHSRWSSSSWGPRKIKQALINKGIEGEVAQKAIKLVFEDGEEFGDEMSSVSLSKISMDHLFIRASKQWLRGRDAPEETRKSRIVRWLQYRGFDWGVTRTILKKLETEYPP 1507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5304606 5318093 - CmaCh09G010330.1 Cma09g01033 301038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01033 1507 Pfam Kinesin motor domain 438 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 PANTHER KINESIN-LIKE PROTEIN KIN-14F 35 1129 - -
Cma09g01033 1507 Coils Coil 363 408 - -
Cma09g01033 1507 MobiDBLite consensus disorder prediction 982 1016 - -
Cma09g01033 1507 MobiDBLite consensus disorder prediction 876 897 - -
Cma09g01033 1507 Coils Coil 767 801 - -
Cma09g01033 1507 Pfam RecX family 1368 1500 IPR003783 GO:0006282
Cma09g01033 1507 MobiDBLite consensus disorder prediction 911 934 - -
Cma09g01033 1507 SMART kinesin_4 430 768 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 MobiDBLite consensus disorder prediction 801 934 - -
Cma09g01033 1507 ProSiteProfiles Kinesin motor domain profile. 432 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 SMART ch_5 61 178 IPR001715 GO:0005515
Cma09g01033 1507 PRINTS Kinesin heavy chain signature 710 731 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 PRINTS Kinesin heavy chain signature 661 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 PRINTS Kinesin heavy chain signature 630 647 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 PRINTS Kinesin heavy chain signature 507 528 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma09g01033 1507 ProSiteProfiles Calponin homology (CH) domain profile. 59 180 IPR001715 GO:0005515
Cma09g01033 1507 Pfam Calponin homology (CH) domain 81 180 IPR001715 GO:0005515
Cma09g01033 1507 MobiDBLite consensus disorder prediction 982 1002 - -
Cma09g01033 1507 Hamap Regulatory protein RecX [recX]. 1330 1505 IPR003783 GO:0006282
Cma09g01033 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 796 IPR027417 -
Cma09g01033 1507 Gene3D - 1389 1432 IPR036388 -
Cma09g01033 1507 SUPERFAMILY Calponin-homology domain, CH-domain 62 197 IPR036872 -
Cma09g01033 1507 Gene3D - 45 194 IPR036872 -
Cma09g01033 1507 Gene3D Kinesin motor domain 374 762 IPR036961 -
Cma09g01033 1507 PANTHER KINESIN-LIKE PROTEIN KLP-3 35 1129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01033 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1865.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01058 Cma09g01033 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01033 Cma-Chr9:5304606 Cma14g00920 Cma-Chr14:4770835 0 dispersed
Cma12g00745 Cma-Chr12:4602382 Cma09g01033 Cma-Chr9:5304606 7.69E-30 dispersed
Cma01g01058 Cma-Chr1:7825331 Cma09g01033 Cma-Chr9:5304606 3.28E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01033 Cma_Chr09 FPKM 3.293215 3.518176 3.436076 4.518713 8.892159 8.194718 9.556237 5.730651 5.611311 6.046683