Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01034 ATGAAAAAATACCTTCATTTTCTCTCTCTAAACGAATTTCCGGCTCGACTTCGGCAGATTTGCATTCGCTCGCTGATCGCCGCGGGATTTGGATTGGATCTGCAGCGTAGTCGTACTATTAAGATTTTGGGCATGGGCTCTGCTTCAGTTGCTGATTTAATAGAGGCATCCTCTGGCGTGCACTTTTCTGGACGTCTTATTGATAGAAAGCAACAAAATGGACATACAAGGAGATTGATGTCAGAAACTGAAAATTTTCATAAACAACCTTTTGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACTACAGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTTGTTCTTGTAAACCAGGATTCTTTTTATCATAATTTATCTTCAGAGGAACTTACACAAGTACACGAATACAACTTTGACCATCCTGATGCATTTGATACAGAGGAACTTCTAAGCTCAATGGAAAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTATAATAATAATGTGTTTCCACCAAGAAGGGTTAACCCTTCGGATGTAATCATTTTGGAAGGAATTCTTGTTTTCCATGACCCTCGCGTTCGAGAACTGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTTCGTTTGGCGAGAAGGATAAGGCGTGACACTGCGGAGAAGGCTAGAGACATTGCTACAGTGCTTGATCAGTATTCAAAATTTGTAAAGCCTGCTTTTGATGACTTCATACTTCCTACAAAGAAGTATGCTGATATAATCATCCCCAGAGGGGGTGATAATCATGTTGCCATTGACTTGATCGTACAACATATTCGCACAAAGCTTGGTCAGCATGATCTTTGTAAAATATACCCTAATTTATACGTCATCCAGTCAACATTTCAGATACGAGGCATGCATACATTAGTTCGAGATGCTAAAACTACAAAGCATGATTTTGTGTTTTATGCTGACCGATTGATTCGTCTGGTTGTTGAACATGGTCTGGGACATTTACCATTTACAGAAAAGCAGGTGACCACTCCAACTGGATCTGTGTATAGTGGCGTTGATTTCTGCAAGAGGTTATGTGGCGTCTCTGTCATCAGGAGTGGTGAGAGTATGGAAAATGCTCTGCGAGCATGTTGTAAAGGCATAAAAATTGGAAAGATTCTCATTCATAGGGAAGGTGACAATGGCCAACATTTAATTTATGAAAAACTACCCTCAGATATCTCCAATAGGCATGTATTACTTTTGGATCCCATCCTGGGCACAGGAAACTCGGCGGTGCAAGCTATTTCTTTGCTCATAAGTAAGGGTGTTCCAGAGCCTAATATTATATTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTGTGTAAACGTTTTCCAAGAATAAAGATTGTGACATCTGAAATTGAGATTGGCCTGAATGAAGATTCCCGTGTGGTGCCTGGTATGGGTGAGTTTGGGGACCGGTATTTTGGAACCGACGATGATGAACAAGTGCGGGCCTCTCCACAGTAG 1563 41.27 MKKYLHFLSLNEFPARLRQICIRSLIAAGFGLDLQRSRTIKILGMGSASVADLIEASSGVHFSGRLIDRKQQNGHTRRLMSETENFHKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLSSEELTQVHEYNFDHPDAFDTEELLSSMEKLRHGEPVDIPKYDFKSYNNNVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTAEKARDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLVRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQHLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNEDSRVVPGMGEFGDRYFGTDDDEQVRASPQ 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5330654 5339070 + CmaCh09G010340.1 Cma09g01034 301039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01034 520 PANTHER URIDINE KINASE 70 511 - -
Cma09g01034 520 Pfam Phosphoribulokinase / Uridine kinase family 92 278 IPR006083 GO:0005524|GO:0016301
Cma09g01034 520 Pfam Uracil phosphoribosyltransferase 308 509 - -
Cma09g01034 520 Gene3D - 86 293 IPR027417 -
Cma09g01034 520 SUPERFAMILY PRTase-like 293 510 IPR029057 -
Cma09g01034 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 283 IPR027417 -
Cma09g01034 520 CDD PRTases_typeI 367 482 IPR000836 -
Cma09g01034 520 Gene3D - 294 509 IPR029057 -
Cma09g01034 520 TIGRFAM udk: uridine kinase 89 290 IPR000764 -
Cma09g01034 520 CDD UMPK 92 290 IPR000764 -
Cma09g01034 520 PANTHER URIDINE KINASE-LIKE PROTEIN 3 70 511 - -
Cma09g01034 520 PRINTS Uridine kinase signature 90 107 - -
Cma09g01034 520 PRINTS Uridine kinase signature 165 180 - -
Cma09g01034 520 PRINTS Uridine kinase signature 222 232 - -
Cma09g01034 520 PRINTS Uridine kinase signature 236 247 - -
Cma09g01034 520 PRINTS Uridine kinase signature 120 131 - -
Cma09g01034 520 PRINTS Uridine kinase signature 258 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01034 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101219714 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00388 Cma-Chr1:1943052 Cma09g01034 Cma-Chr9:5330654 0 dispersed
Cma02g01644 Cma-Chr2:9321347 Cma09g01034 Cma-Chr9:5330654 1.17E-14 dispersed
Cma03g00404 Cma-Chr3:4441775 Cma09g01034 Cma-Chr9:5330654 3.48E-16 dispersed
Cma09g01034 Cma-Chr9:5330654 Cma19g00207 Cma-Chr19:1366651 6.13E-16 dispersed
Cma09g01034 Cma-Chr9:5330654 Cma11g01493 Cma-Chr11:9822021 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma20g00802 CST 76 562 PRT Gene Family AT2G16570 83.4 8.2e-240 827.0
Cma02g00358 CST 68 554 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cma02g00358 CST 70 554 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cma20g00802 CST 82 562 PRT Gene Family AT4G34740 85.1 9.6e-241 830.1
Cma20g00802 CST 60 535 PRT Gene Family AT4G38880 72.7 2.5e-198 689.1
Cma02g00358 CST 26 527 PRT Gene Family AT4G38880 68.3 5.8e-195 677.9
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma15g01143 . 5 97 PRT Gene Family AT4G22570 86.0 2.0e-43 172.2
Cma16g01064 . 5 97 PRT Gene Family AT4G22570 86.0 3.5e-43 171.4
Cma06g00768 . 5 104 PRT Gene Family AT4G22570 78.0 6.6e-42 167.2
Cma05g00145 CST 5 97 PRT Gene Family AT4G22570 80.6 4.0e-39 157.9
Cma12g00594 CST 81 171 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cma12g00344 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cma15g01143 . 1 96 PRT Gene Family AT4G12440 83.3 2.5e-40 161.8
Cma06g00768 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cma16g01064 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cma12g00594 CST 75 170 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cma05g00145 CST 1 96 PRT Gene Family AT4G12440 78.1 3.4e-37 151.4
Cma12g00344 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma04g02471 . 1 184 PRT Gene Family AT1G71750 65.1 1.2e-68 256.9
Cma09g01034 . 60 512 PRT Gene Family AT1G55810 85.2 2.9e-224 775.0
Cma01g00388 . 19 482 PRT Gene Family AT1G55810 73.8 1.1e-199 693.3
Cma11g01493 . 550 964 PRT Gene Family AT1G55810 79.2 5.4e-194 674.5
Cma09g01034 . 109 511 PRT Gene Family AT3G27440 76.9 1.6e-184 642.9
Cma01g00388 . 80 482 PRT Gene Family AT3G27440 74.4 1.9e-177 619.4
Cma11g01493 . 565 964 PRT Gene Family AT3G27440 74.7 2.5e-177 619.0
Cma01g00388 . 1 482 PRT Gene Family AT3G27190 85.7 2.1e-244 842.0
Cma11g01493 . 550 964 PRT Gene Family AT3G27190 88.5 3.8e-222 768.1
Cma09g01034 . 47 511 PRT Gene Family AT3G27190 72.7 4.7e-204 708.0
Cma03g00404 . 4 286 PRT Gene Family AT3G53900 67.7 6.0e-109 391.3
Cma09g01034 . 45 512 PRT Gene Family AT4G26510 83.2 2.8e-230 795.0
Cma01g00388 . 11 482 PRT Gene Family AT4G26510 75.0 3.3e-210 728.4
Cma11g01493 . 550 964 PRT Gene Family AT4G26510 81.3 3.0e-203 705.3
Cma01g00388 . 1 482 PRT Gene Family AT5G40870 85.7 4.0e-243 837.8
Cma11g01493 . 550 964 PRT Gene Family AT5G40870 90.4 1.7e-225 779.2
Cma09g01034 . 88 514 PRT Gene Family AT5G40870 78.7 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01034 Cma_Chr09 FPKM 6.840839 6.207679 8.588061 8.142281 6.721835 6.377515 7.256358 5.995163 7.069573 6.959901