Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01064 ATGGATGAACTAAAACTCGAAAACTTACCGTTCTTGGGAATCATCGGAATTCTCCAAGAAACTTGGAAATTGATACACCAATGGAGGAAAATCTTCACCCAAATTGCTCTTGCCTTCATTCTTCCTCTCTCTCTCTTGTTCTTCACCAACATGGAAATATCCAATTTTTTCCTTCACAAAATCTCCCATGATAAAATGATTTTACAACACACTCAAAAATTCACACCCCAATTCCTTAAACTCTCCGACCTCGTATCCTCCGAAAGAATCTATACTGTTCTTTTCACTTTAGCATCCTTAATCTTCTCGACGATCTTCTCTCTCCTCTCTACCTCCGCTGTCGTCTATACTGTTGCCTATATCTACACGGCACGTGACGTTTCTTTCAATATCGTGATCCAGGTCCTCCCGAAAGTTTGGAGGAAGCTTCTTGTTACATTTTTGTGTGTTTTTGCAGCCTTTTTGGCCTTCAATTTTGTTGCTTTTGCTGTGATGTTTTTGATACCTGTGATAGCAATCATAATCTATGGCCCAAATGACCATCACTTCTTAGCCGGCATTGGAACCATTTTTTTCTTCTTTACCATCTTTTATTTAGCTGCCATTTGGTACTTGACCATAATTTGGCAACTTTCGAGCATCGTGTCGGTTTTGGAGGCGTCGTGTGGGTTCAAAGCCATGGCGAAAAGCAAGGGTTTGCTTAAGGGGAAGATGAAGATGGTGGTGAAGTTAACAATGTTGCTGAATTTGCCATTGGGAGTGGCTCAGTTGGTGTTTTACTACTTGGTTGTTCGGTCAGCGTCGGTCGGGGCGGCGGGCAGGGGTATTTTGGGGTTTTGTTGGGTGGTGTTGTTTATGGTGTTGTTCTTGGTGAAGCTTGTGGTGGAAACTATGGTGTATTTTGTGTGCAAATCGTATCATTGTGAGAGTGTTGATAAGGTGGCGCTGTCGGAGCATCTTCAAGGCTATCTGTCGGATCACTATGTCCAGTTGAAGGTGGTTGATGACGATGTGCAGCTTGCCAAATTGCAAGCTGTTTAA 1041 42.75 MDELKLENLPFLGIIGILQETWKLIHQWRKIFTQIALAFILPLSLLFFTNMEISNFFLHKISHDKMILQHTQKFTPQFLKLSDLVSSERIYTVLFTLASLIFSTIFSLLSTSAVVYTVAYIYTARDVSFNIVIQVLPKVWRKLLVTFLCVFAAFLAFNFVAFAVMFLIPVIAIIIYGPNDHHFLAGIGTIFFFFTIFYLAAIWYLTIIWQLSSIVSVLEASCGFKAMAKSKGLLKGKMKMVVKLTMLLNLPLGVAQLVFYYLVVRSASVGAAGRGILGFCWVVLFMVLFLVKLVVETMVYFVCKSYHCESVDKVALSEHLQGYLSDHYVQLKVVDDDVQLAKLQAV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5598124 5599164 + CmaCh09G010640.1 Cma09g01064 301069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01064 346 PANTHER PROTEIN, PUTATIVE-RELATED 5 342 - -
Cma09g01064 346 PANTHER OS08G0107100 PROTEIN-RELATED 5 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01064 - - - cmos:111442875 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01021 Cma-Chr1:7508153 Cma09g01064 Cma-Chr9:5598124 1.06E-37 dispersed
Cma01g01022 Cma-Chr1:7509253 Cma09g01064 Cma-Chr9:5598124 1.86E-57 dispersed
Cma01g01023 Cma-Chr1:7515314 Cma09g01064 Cma-Chr9:5598124 6.70E-52 dispersed
Cma09g01060 Cma-Chr9:5569065 Cma09g01064 Cma-Chr9:5598124 7.28E-87 dispersed
Cma09g01062 Cma-Chr9:5578811 Cma09g01064 Cma-Chr9:5598124 4.88E-41 dispersed
Cma09g01064 Cma-Chr9:5598124 Cma13g00856 Cma-Chr13:7056794 1.02E-40 dispersed
Cma09g01064 Cma-Chr9:5598124 Cma09g01066 Cma-Chr9:5600678 1.97E-96 proximal
Cma09g01063 Cma-Chr9:5585094 Cma09g01064 Cma-Chr9:5598124 2.85E-80 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1185 Blo01g01318 . Bda01g00686 . . . . Bma01g02103 . . . Cma09g01064 . . . Cpe06g00867 . Bhi04g02156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01073 . . . Car09g00967 . Cpe02g00865 . . . . . . . . . . . . . . Lsi08g00272 . Chy03g00836 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002545 0 2 0 0 0 2 2 2 2 2 2 2 3 2 3 3 3 0 1 2 2 2 0 5 4 0 6 2 3 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01064 Cma_Chr09 FPKM 0.086972 0.442463 5.808487 4.658628 8.73927 9.438244 10.741164 0.642964 0.638336 0.905898