Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01066 ATGGATGTAGAACAAGAAGAGATGCAATTTCTCGGAACCTATGGAATTTTCAGAGAAACCGCCAAATTAATTTTCACATGGAGAAGGATTTTCTCCCAAATCACTCTAGCTCTGATTCTTCCCCTCTCCTTTTTGTTCTTGGCTCACATGGAGATCTCCGATCTATTCCTACGAAAAATTATGTTCGACGAATTTGTATTGGACCAAACGCAAACCAGTACAGCCTCATTCGATAAACTCTCCGACATCGTCTCATCAGAGAAGGTCTATTATTTTCTATTTCAAATCGCGTACCTGGTTATCTTCATCGTCCTCTCGCTTCTCTCCACCTCCGCCGTCGTCTACACCGTCGCATCGATCTACACCGGCCGCGACGTCGCCTACAAGCCGGTGATGAGCGTCGTTCCTAAGGTCTGGAAACGTCTCCTCCTCACATTCCTCTGCGTGTTCATCTCCTTCATCGGCTATTCAATCGCCAGCGTCCTCGCCATCTCCTTCCTCTTCTTCCTCATCATCCTCATCTTCGGCTCAGTCGGCGCCGGCGTCATCATCCTTCTCTACATCATCCAGATCATATACCTCGCCGGCGCCTTCTACCTGACGGCGATCTGGCAGCTCTCGAACGTCGTCTCCGTTCTCGAAGATTCTTACGGATTCAAAGCGATGAACAAAAGCTACAGTTTGGTGAAAGGGAAATTAGGGATTTCGATTGTTATAATCCTCATTCTAAGCTTCCCACTCGGAACGGTGCGTTTTGTGTTTGGGAATTTGGTGGTTCGAACGGAGTCATTGGGTGTGCTTACCAAGGGTATTTTGGGAATTTTTTGCTTTTTATTATTTTTTATTTGCTTTCTATTGAAGTTGGTGACGGAGACGGTATTATATTTCGTGTGCAAATCATACCATCATGAAAATATTGACAAGTCGGCCCTCTCGGATCACCTCGAGGTTTATCTATTGGGAGAGTATATGCCGTTGAGGCCTAGAGATGTTCAGCTCGAGAAATTTCAACTTTAA 1017 45.62 MDVEQEEMQFLGTYGIFRETAKLIFTWRRIFSQITLALILPLSFLFLAHMEISDLFLRKIMFDEFVLDQTQTSTASFDKLSDIVSSEKVYYFLFQIAYLVIFIVLSLLSTSAVVYTVASIYTGRDVAYKPVMSVVPKVWKRLLLTFLCVFISFIGYSIASVLAISFLFFLIILIFGSVGAGVIILLYIIQIIYLAGAFYLTAIWQLSNVVSVLEDSYGFKAMNKSYSLVKGKLGISIVIILILSFPLGTVRFVFGNLVVRTESLGVLTKGILGIFCFLLFFICFLLKLVTETVLYFVCKSYHHENIDKSALSDHLEVYLLGEYMPLRPRDVQLEKFQL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5600678 5601694 + CmaCh09G010660.1 Cma09g01066 301071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01066 338 PANTHER PROTEIN, PUTATIVE-RELATED 1 336 - -
Cma09g01066 338 PANTHER OS08G0107100 PROTEIN-RELATED 1 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01066 - - - csv:105435860 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01020 Cma-Chr1:7502860 Cma09g01066 Cma-Chr9:5600678 5.05E-172 dispersed
Cma09g00691 Cma-Chr9:3265759 Cma09g01066 Cma-Chr9:5600678 2.83E-88 dispersed
Cma09g01063 Cma-Chr9:5585094 Cma09g01066 Cma-Chr9:5600678 1.37E-57 dispersed
Cma09g01066 Cma-Chr9:5600678 Cma13g00856 Cma-Chr13:7056794 1.88E-56 dispersed
Cma09g01064 Cma-Chr9:5598124 Cma09g01066 Cma-Chr9:5600678 1.97E-96 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1191 Blo01g01319 . Bda01g00687 . Bpe02g00619 . . Bma01g02105 . . . Cma09g01066 . . . Cpe06g00869 . Bhi04g02153 . . . . . . . . . . . . . . . Cone6ag1275 . . . . . . . . . . . . . . . Cmo09g01074 . . . Car09g00968 . Cpe02g00867 . . . . . . . . . . . . . . Lsi08g00271 . Chy03g00838 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012007 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01066 Cma_Chr09 FPKM 3.587613 2.509231 1.242297 1.882842 1.534027 1.033512 1.683933 5.371576 6.123946 5.177652