Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01069 ATGTCACGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTTGAGATCGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGCGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGATTGTAATCCTTTAATGAGCGAACTGCAAGGCAAATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGGAATCAGAATCAGCTATTCCTCAGCTAAGTGAGGCTTTACAAAAACAGGCAATCTCTGTTGATGGCGGGAATACCCAAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACATCAAGCGCAAAACCAAAAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATAGGCGACTCTGAGTCCGACCTGAAGGAGTACTCATTTTGA 1083 43.03 MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5618308 5622252 - CmaCh09G010690.1 Cma09g01069 301074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01069 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Cma09g01069 360 SUPERFAMILY beta-beta-alpha zinc fingers 292 330 IPR036236 -
Cma09g01069 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cma09g01069 360 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
Cma09g01069 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cma09g01069 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cma09g01069 360 Gene3D - 100 172 IPR037188 -
Cma09g01069 360 Gene3D - 1 96 IPR036786 -
Cma09g01069 360 Gene3D - 174 251 - -
Cma09g01069 360 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 231 IPR002140 GO:0042256
Cma09g01069 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cma09g01069 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 360 IPR039100 -
Cma09g01069 360 PANTHER BNAANNG06530D PROTEIN 1 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00522 Cma-Chr9:2320813 Cma09g01069 Cma-Chr9:5618308 3.93E-06 dispersed
Cma09g01069 Cma-Chr9:5618308 Cma01g01546 Cma-Chr1:10788885 4.52E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01069 K14574 - csv:101215380 654.055