Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01077 ATGCTTGGTGACTCCACTACTTCCGTCTTGGGCGGTGGCGCCGCCGTACCGGAGACGAATCATTGCCATGATGAGGTAATCGGAGACATGGGTGACGGCGGGGGTGTAGCGGCGGCGGAGGAGATTAATAACAATTCTGGTGAAGAGGAGAGACGGAGAAGCGGAGGAGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACCTTAGCNCTCCTGAAAATTCGCTCCGATATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGATATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATACCATAAAAGAACAAGAGAAGTTCGTAGTGGGAAACCAGATAGCAAAACTTACAAATTTTTTGAACAATTAGAAGCTCTTGAGAATCACCCACCTTTTAATTTCAATCCACCGCCGCCGCCGCCGCCGCCGTCAACCACCGTCATTCCCACTGTTCNATCCACCACCACCCTACCCCACTTGATGAACATATCCTTCTCTCAACCAAATCCCACAATTCACCTCCCATCTCCTCCTCGTCCCGCTCCGTTCAATAACCTTACCACCTCATCCGTCCCCGTTGGGTTTCTTGAAGCGGATCTCATCTCGAATTCGACGTCAGATGATGTCGATGATTCATCGACATCATCCGAGACACCGAGGAGGAGGACGAAGAAGAGGAAATGGAAGGAGTTTTTTGAGAAATTAATGAAGGAAGTGATTCAAAAACAAGTGGAAATGCAAAAGAGATTCTTGGAAGCTATTGAGAAAAGGGAACAAGAGAGAATTGTTAGAGAAGAAGCTTGGAGAATTCAAGAAATGGCTAAAATCAATAGAGAAAGAGAGATTTTAGCTCATGAAAGATCAATGGCGGCTGCTAAAGACGCCGCCATTACTTCCTTCCTCCAAAAAATAACCGAATCCCAAAACAACAACAGCAACAACAACAACAATTTGTCACGAACGCCACCGCCACCGCCTCCACCACAACAACAACCAATACCCATGTCAAATCCGACACCGGTCGTACAACCGCCACCACCACCGCCACCTTCATCGACATTGCAAGTAGTTCTTCCACAAAAAATGGAGATTATGAAAATGGATCATAATGGTGGGGAGAATTACACTATGAGTCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTAGAAGCATTGATCAAATTAAGAACAAATCTTGAAGCCAAATATCAAGAGAATGTACCAAAAGGGCCATTATGGGAAGAGATATCATCAGCCATGAAGAAAATAGGTTACAATAGAAATGCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAACAAGAAAAACAAGGCCAGAGGATTCCAAGACATGCCCTTATTTTCACCAGCTCGATGCATTGTATAGGGAAAAGGGCGGCGGAAACAACAACAACAACAACAACAGGAAGCTCGAGCTCGAAAACATCGGTTCTTCGACGATGATTCCGTTGATGGTTCAGCCCGAACAACAATGGCCACCGCAGCAAGAGATCACCCGACCAGACTCGGGCAACGAAGAGATGGAAAGCGAACCGATGGATCGCGACGATAAAGATGATGATGATGAAGAGGAAGAGGAAGAGGACGAGGGTGGTGGGAACTATGAGATTGTGGCTAGCAAACCAACTTCGGTGAGTACTGCTGAGTGA 1782 46.13 MLGDSTTSVLGGGAAVPETNHCHDEVIGDMGDGGGVAAAEEINNNSGEEERRRSGGGDDGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTREVRSGKPDSKTYKFFEQLEALENHPPFNFNPPPPPPPPSTTVIPTVXSTTTLPHLMNISFSQPNPTIHLPSPPRPAPFNNLTTSSVPVGFLEADLISNSTSDDVDDSSTSSETPRRRTKKRKWKEFFEKLMKEVIQKQVEMQKRFLEAIEKREQERIVREEAWRIQEMAKINREREILAHERSMAAAKDAAITSFLQKITESQNNNSNNNNNLSRTPPPPPPPQQQPIPMSNPTPVVQPPPPPPPSSTLQVVLPQKMEIMKMDHNGGENYTMSPASSSSRWPKVEVEALIKLRTNLEAKYQENVPKGPLWEEISSAMKKIGYNRNAKRCKEKWENINKYFKKVKETRKTRPEDSKTCPYFHQLDALYREKGGGNNNNNNNRKLELENIGSSTMIPLMVQPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDEEEEEEDEGGGNYEIVASKPTSVSTAE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5686463 5688867 + CmaCh09G010770.1 Cma09g01077 301082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01077 593 ProSiteProfiles Myb-like domain profile. 405 469 IPR001005 -
Cma09g01077 593 MobiDBLite consensus disorder prediction 191 213 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 230 249 - -
Cma09g01077 593 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Cma09g01077 593 MobiDBLite consensus disorder prediction 328 345 - -
Cma09g01077 593 CDD GT1 411 476 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 553 577 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 503 545 - -
Cma09g01077 593 PANTHER - 33 588 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 44 59 - -
Cma09g01077 593 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 33 588 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 346 381 - -
Cma09g01077 593 Gene3D - 69 130 - -
Cma09g01077 593 Gene3D - 413 474 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 1 68 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 158 174 - -
Cma09g01077 593 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Cma09g01077 593 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Cma09g01077 593 SMART sant 65 127 IPR001005 -
Cma09g01077 593 SMART sant 409 471 IPR001005 -
Cma09g01077 593 MobiDBLite consensus disorder prediction 328 388 - -
Cma09g01077 593 CDD GT1 67 132 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 155 177 - -
Cma09g01077 593 MobiDBLite consensus disorder prediction 500 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01012 Cma-Chr1:7366076 Cma09g01077 Cma-Chr9:5686463 0 dispersed
Cma09g01077 Cma-Chr9:5686463 Cma02g00969 Cma-Chr2:5785720 7.32E-121 dispersed
Cma09g01077 Cma-Chr9:5686463 Cma09g01078 Cma-Chr9:5703493 2.14E-65 tandem
Cma13g00388 Cma-Chr13:4468626 Cma09g01077 Cma-Chr9:5686463 6.55E-17 transposed
Cma01g01011 Cma-Chr1:7341263 Cma09g01077 Cma-Chr9:5686463 2.47E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35651 PF13837 Myb_DNA-bind_4 1.20E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01077 - - cmos:111443426 843.958