Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01080 ATGGATTTTCGGGGCGCAATCGTTGGTGTTTTACGGTTTCAATTTGCCGATATACCAATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACGGCGCCCCTGCGGCAGCCCAGGGTGGTGGGAAGTCAAAGAAAAAGACATTTGCAGTAGATGACGATGAGTACTCTATTGGAACCGAGTTGACTGAAGAAGCCCAAGATCAGGAGGTCAAGGTCATGATAACGGGGAAGAAGAAAGGTAAGAAGGGCAATTCGAAAGCTTCACAACTTAAAGATGATGATGATGATGATGATGATGTGGATGGTGTTTCTGAAATTGTTATCACCGGAAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAAAGGATGGCGCTAATGATGATGACGATGATGATGAATCTGTGTTGACAGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGTGATCAAGTTTTCAGGTAAGAAGAAGTCGTCGAAGTCTTCCAAGAAGAGTGGGTTTTCTGCAGTGTCAGCATTCGGTGCCCTTGATGATGAGAAGGACGAAGATGTAATTGATGATGAGAATGAAGAGATTGATGATGAGCCTGTTATTTCATTTACAGGTAAGAAGAAGTCATCACAAGGTGGTAAGAAGGCCGGGAATGCATTTACAGGTTTTAGTGGTCTTGATTATGAAGATGAGGACAGAAATGATGATAAGGATGATGGTGAAGATTTTACTACAATGACCTTCTCTGGTAAGAAAAAGAAGTCCTCTAAGGGTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGTGATGATTCTATTTCAAAGCCAGGTAAATTAGACATTGATGGTGTTGATGAGGACGATGTCAATGTTATTTCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAATAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCGCTTGGCGATGAAATACTCAATACAGCAAGTAGCAATCTTGATTCTAATTTATCTAAAGCTAAGACGGAAGCGGTGGCTGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCAGCTACATCAAAATCAGCAGATCCTCCTCTTTCTTCACAAGAGGCTAAAGTTGAGAACCAACCTGAGCTTGTAGCTCCTCCTGAAAAGGAAGTGGAAGAAGAAAGCACAGAATCTGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAAGAGAAGGAAAAAAAGGCTGCAGCTGCGGCAGCAGCGGCTGCTGAAGGGAATGATGAGAAAATCGAGGAGGTGAAGACCGAAATTATTGAACCCAAAAAAGGTGCTGCCAAGGGTAAAGTGGTAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGAAGAAAGGAAGAAGAAGAGCGAAGGAAAAGGGAAGAAGAAGAGAAATTGAGAAAGGAAGAAGAAGAGAGACGTAGACAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAGAAGGAAAGAGAAAAAGAGAAGCTCCTACGGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGCTGGAGGCAATGAGGAATCAGATATTATCAAATGCAGGGGCCTTACCTCTATCTACATCTGACCCCAGTGCACCGGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCACCATCAAACAAATGGTAGTGCACAGACTAAGGTAGTGGAACATGTAGAAGAAAGAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTGGAATCTGAGAAGATTGAAGCTGTTGAGTCGATGCTTGTGGAGGAAAAATCAGATACTATTGAGGAGGCTACTGTAGATAATGAAATTCAAGAAGACGAGGATGATGATGAATGGGATGCAAAGAGTTGGGATGATGCGGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTGGAGTCCGAATCTGAGAATGGCATGAAAAAAAATAGAAAGAATAGTGCTCCAACTTCAGGCGGTGCAGTTGCCAAGCCAGCTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAACACAAAGAAGCAACATGAGGTTGAGGTTGTGGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAACAGAACTTCAATTCCGGATGCTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCTACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAATCGTTTACAAACTTGCGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAACCCGCAATGCACCTATACTTAAGACAATGAAGCAGCAATCCAAAGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAAGGGTTAAATACCGAGCTTTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCCGACATGTTACTACTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAGGTTGTTGAAGGTCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACATATCTACATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCACGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCAATGGAAGATATGAAGTCAGTTTTGAGCAGGATAGACAGGTCTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATTAGTATAGGACCCGTTCATAAAAAGGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCAGATGAGCTTGGTGTGAAGATTTTTATCGCTGATATCATCTATCACTTGTTCGACCAATTCAAGGCCTATATCGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTTAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTGGATGTGGTTGAAGGCATTGCCAAGGTTGGCACACCAGTTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGTATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTCGGGCACTCTTCGGAGGAGCAGCAAAAGATGTACGGCAGGCATTTCGACTTGGAGGACGAACTCGTCAGCCATATATCCAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGTTAGTTTACTTCTCTCTCTCTTTCGTTCTCTCTGTTTCATCGTGAAATTCGAGCCTACGATGATATGGTAA 4149 42.03 MDFRGAIVGVLRFQFADIPMGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELTEEAQDQEVKVMITGKKKGKKGNSKASQLKDDDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGKDGANDDDDDDESVLTAEKDDDEEEDSVIKFSGKKKSSKSSKKSGFSAVSAFGALDDEKDEDVIDDENEEIDDEPVISFTGKKKSSQGGKKAGNAFTGFSGLDYEDEDRNDDKDDGEDFTTMTFSGKKKKSSKGSKKSGNLFSAALADEENDGDDSISKPGKLDIDGVDEDDVNVISFSGKKKSSKKNSSSTFTALSDENALGDEILNTASSNLDSNLSKAKTEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPATSKSADPPLSSQEAKVENQPELVAPPEKEVEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKGKVVEKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGALPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSAQTKVVEHVEERIQEKDVAETEILESEKIEAVESMLVEEKSDTIEEATVDNEIQEDEDDDEWDAKSWDDAVVDLSLKSSFADEELESESENGMKKNRKNSAPTSGGAVAKPAAPAQKSLPSQPIKSQDIENTKKQHEVEVVDKGKRKDDAVKNRTSIPDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTTRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDRSGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVVEGIAKVGTPVCIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRVSLLLSLFRSLCFIVKFEPTMIW 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5734508 5745706 + CmaCh09G010800.1 Cma09g01080 301085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01080 1382 SUPERFAMILY Translation proteins 1247 1367 IPR009000 -
Cma09g01080 1382 Pfam Elongation factor Tu domain 2 1027 1104 IPR004161 GO:0005525
Cma09g01080 1382 MobiDBLite consensus disorder prediction 315 362 - -
Cma09g01080 1382 Coils Coil 428 464 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 463 576 - -
Cma09g01080 1382 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 20 1362 IPR015760 -
Cma09g01080 1382 Gene3D - 782 1010 IPR027417 -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 420 441 - -
Cma09g01080 1382 CDD aeIF5B_II 1012 1122 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 289 306 - -
Cma09g01080 1382 Gene3D Translation factors 1011 1129 - -
Cma09g01080 1382 CDD IF2_aeIF5B_IV 1251 1346 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 74 625 - -
Cma09g01080 1382 Pfam Elongation factor Tu GTP binding domain 792 1000 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 MobiDBLite consensus disorder prediction 698 714 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 138 162 - -
Cma09g01080 1382 CDD IF2_eIF5B 791 1001 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 656 784 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 376 391 - -
Cma09g01080 1382 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 788 1004 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 Coils Coil 492 559 - -
Cma09g01080 1382 Gene3D Translation factors 1243 1370 - -
Cma09g01080 1382 PRINTS GTP-binding elongation factor signature 872 883 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 PRINTS GTP-binding elongation factor signature 908 917 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 PRINTS GTP-binding elongation factor signature 792 805 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 PRINTS GTP-binding elongation factor signature 856 866 IPR000795 GO:0003924|GO:0005525
Cma09g01080 1382 MobiDBLite consensus disorder prediction 667 685 - -
Cma09g01080 1382 Coils Coil 656 676 - -
Cma09g01080 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1079 IPR027417 -
Cma09g01080 1382 Coils Coil 1225 1245 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 19 48 - -
Cma09g01080 1382 MobiDBLite consensus disorder prediction 195 211 - -
Cma09g01080 1382 Gene3D - 1130 1236 IPR036925 -
Cma09g01080 1382 Pfam Translation-initiation factor 2 1117 1229 IPR023115 -
Cma09g01080 1382 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1113 1242 IPR036925 -
Cma09g01080 1382 TIGRFAM small_GTP: small GTP-binding protein domain 793 919 IPR005225 GO:0005525
Cma09g01080 1382 MobiDBLite consensus disorder prediction 748 773 - -
Cma09g01080 1382 PANTHER PHOTOSYSTEM II PROTEIN D1 20 1362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00711 Cma-Chr4:3596550 Cma09g01080 Cma-Chr9:5734508 2.44E-27 dispersed
Cma09g01080 Cma-Chr9:5734508 Cma04g02755 Cma-Chr4:18520175 7.78E-06 dispersed
Cma01g01340 Cma-Chr1:9587798 Cma09g01080 Cma-Chr9:5734508 2.15E-28 transposed
Cma01g01008 Cma-Chr1:7299375 Cma09g01080 Cma-Chr9:5734508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01080 K03243 - csv:101204360 1878.6