Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g01080 | ATGGATTTTCGGGGCGCAATCGTTGGTGTTTTACGGTTTCAATTTGCCGATATACCAATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACGGCGCCCCTGCGGCAGCCCAGGGTGGTGGGAAGTCAAAGAAAAAGACATTTGCAGTAGATGACGATGAGTACTCTATTGGAACCGAGTTGACTGAAGAAGCCCAAGATCAGGAGGTCAAGGTCATGATAACGGGGAAGAAGAAAGGTAAGAAGGGCAATTCGAAAGCTTCACAACTTAAAGATGATGATGATGATGATGATGATGTGGATGGTGTTTCTGAAATTGTTATCACCGGAAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAAAGGATGGCGCTAATGATGATGACGATGATGATGAATCTGTGTTGACAGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGTGATCAAGTTTTCAGGTAAGAAGAAGTCGTCGAAGTCTTCCAAGAAGAGTGGGTTTTCTGCAGTGTCAGCATTCGGTGCCCTTGATGATGAGAAGGACGAAGATGTAATTGATGATGAGAATGAAGAGATTGATGATGAGCCTGTTATTTCATTTACAGGTAAGAAGAAGTCATCACAAGGTGGTAAGAAGGCCGGGAATGCATTTACAGGTTTTAGTGGTCTTGATTATGAAGATGAGGACAGAAATGATGATAAGGATGATGGTGAAGATTTTACTACAATGACCTTCTCTGGTAAGAAAAAGAAGTCCTCTAAGGGTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGTGATGATTCTATTTCAAAGCCAGGTAAATTAGACATTGATGGTGTTGATGAGGACGATGTCAATGTTATTTCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAATAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCGCTTGGCGATGAAATACTCAATACAGCAAGTAGCAATCTTGATTCTAATTTATCTAAAGCTAAGACGGAAGCGGTGGCTGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCAGCTACATCAAAATCAGCAGATCCTCCTCTTTCTTCACAAGAGGCTAAAGTTGAGAACCAACCTGAGCTTGTAGCTCCTCCTGAAAAGGAAGTGGAAGAAGAAAGCACAGAATCTGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAAGAGAAGGAAAAAAAGGCTGCAGCTGCGGCAGCAGCGGCTGCTGAAGGGAATGATGAGAAAATCGAGGAGGTGAAGACCGAAATTATTGAACCCAAAAAAGGTGCTGCCAAGGGTAAAGTGGTAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGAAGAAAGGAAGAAGAAGAGCGAAGGAAAAGGGAAGAAGAAGAGAAATTGAGAAAGGAAGAAGAAGAGAGACGTAGACAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAGAAGGAAAGAGAAAAAGAGAAGCTCCTACGGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGCTGGAGGCAATGAGGAATCAGATATTATCAAATGCAGGGGCCTTACCTCTATCTACATCTGACCCCAGTGCACCGGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCACCATCAAACAAATGGTAGTGCACAGACTAAGGTAGTGGAACATGTAGAAGAAAGAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTGGAATCTGAGAAGATTGAAGCTGTTGAGTCGATGCTTGTGGAGGAAAAATCAGATACTATTGAGGAGGCTACTGTAGATAATGAAATTCAAGAAGACGAGGATGATGATGAATGGGATGCAAAGAGTTGGGATGATGCGGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTGGAGTCCGAATCTGAGAATGGCATGAAAAAAAATAGAAAGAATAGTGCTCCAACTTCAGGCGGTGCAGTTGCCAAGCCAGCTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAACACAAAGAAGCAACATGAGGTTGAGGTTGTGGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAACAGAACTTCAATTCCGGATGCTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCTACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAATCGTTTACAAACTTGCGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAACCCGCAATGCACCTATACTTAAGACAATGAAGCAGCAATCCAAAGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAAGGGTTAAATACCGAGCTTTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCCGACATGTTACTACTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAGGTTGTTGAAGGTCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACATATCTACATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCACGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCAATGGAAGATATGAAGTCAGTTTTGAGCAGGATAGACAGGTCTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATTAGTATAGGACCCGTTCATAAAAAGGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCAGATGAGCTTGGTGTGAAGATTTTTATCGCTGATATCATCTATCACTTGTTCGACCAATTCAAGGCCTATATCGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTTAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTGGATGTGGTTGAAGGCATTGCCAAGGTTGGCACACCAGTTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGTATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTCGGGCACTCTTCGGAGGAGCAGCAAAAGATGTACGGCAGGCATTTCGACTTGGAGGACGAACTCGTCAGCCATATATCCAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGTTAGTTTACTTCTCTCTCTCTTTCGTTCTCTCTGTTTCATCGTGAAATTCGAGCCTACGATGATATGGTAA | 4149 | 42.03 | MDFRGAIVGVLRFQFADIPMGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELTEEAQDQEVKVMITGKKKGKKGNSKASQLKDDDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGKDGANDDDDDDESVLTAEKDDDEEEDSVIKFSGKKKSSKSSKKSGFSAVSAFGALDDEKDEDVIDDENEEIDDEPVISFTGKKKSSQGGKKAGNAFTGFSGLDYEDEDRNDDKDDGEDFTTMTFSGKKKKSSKGSKKSGNLFSAALADEENDGDDSISKPGKLDIDGVDEDDVNVISFSGKKKSSKKNSSSTFTALSDENALGDEILNTASSNLDSNLSKAKTEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPATSKSADPPLSSQEAKVENQPELVAPPEKEVEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKGKVVEKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGALPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSAQTKVVEHVEERIQEKDVAETEILESEKIEAVESMLVEEKSDTIEEATVDNEIQEDEDDDEWDAKSWDDAVVDLSLKSSFADEELESESENGMKKNRKNSAPTSGGAVAKPAAPAQKSLPSQPIKSQDIENTKKQHEVEVVDKGKRKDDAVKNRTSIPDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTTRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDRSGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVVEGIAKVGTPVCIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRVSLLLSLFRSLCFIVKFEPTMIW | 1382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5734508 | 5745706 | + | CmaCh09G010800.1 | Cma09g01080 | 301085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g01080 | 1382 | SUPERFAMILY | Translation proteins | 1247 | 1367 | IPR009000 | - | |
Cma09g01080 | 1382 | Pfam | Elongation factor Tu domain 2 | 1027 | 1104 | IPR004161 | GO:0005525 | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 315 | 362 | - | - | |
Cma09g01080 | 1382 | Coils | Coil | 428 | 464 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 463 | 576 | - | - | |
Cma09g01080 | 1382 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 20 | 1362 | IPR015760 | - | |
Cma09g01080 | 1382 | Gene3D | - | 782 | 1010 | IPR027417 | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 420 | 441 | - | - | |
Cma09g01080 | 1382 | CDD | aeIF5B_II | 1012 | 1122 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 289 | 306 | - | - | |
Cma09g01080 | 1382 | Gene3D | Translation factors | 1011 | 1129 | - | - | |
Cma09g01080 | 1382 | CDD | IF2_aeIF5B_IV | 1251 | 1346 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 74 | 625 | - | - | |
Cma09g01080 | 1382 | Pfam | Elongation factor Tu GTP binding domain | 792 | 1000 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 698 | 714 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 138 | 162 | - | - | |
Cma09g01080 | 1382 | CDD | IF2_eIF5B | 791 | 1001 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 656 | 784 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 376 | 391 | - | - | |
Cma09g01080 | 1382 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 788 | 1004 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | Coils | Coil | 492 | 559 | - | - | |
Cma09g01080 | 1382 | Gene3D | Translation factors | 1243 | 1370 | - | - | |
Cma09g01080 | 1382 | PRINTS | GTP-binding elongation factor signature | 872 | 883 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | PRINTS | GTP-binding elongation factor signature | 908 | 917 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | PRINTS | GTP-binding elongation factor signature | 792 | 805 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | PRINTS | GTP-binding elongation factor signature | 856 | 866 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 667 | 685 | - | - | |
Cma09g01080 | 1382 | Coils | Coil | 656 | 676 | - | - | |
Cma09g01080 | 1382 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 785 | 1079 | IPR027417 | - | |
Cma09g01080 | 1382 | Coils | Coil | 1225 | 1245 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 19 | 48 | - | - | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 195 | 211 | - | - | |
Cma09g01080 | 1382 | Gene3D | - | 1130 | 1236 | IPR036925 | - | |
Cma09g01080 | 1382 | Pfam | Translation-initiation factor 2 | 1117 | 1229 | IPR023115 | - | |
Cma09g01080 | 1382 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1113 | 1242 | IPR036925 | - | |
Cma09g01080 | 1382 | TIGRFAM | small_GTP: small GTP-binding protein domain | 793 | 919 | IPR005225 | GO:0005525 | |
Cma09g01080 | 1382 | MobiDBLite | consensus disorder prediction | 748 | 773 | - | - | |
Cma09g01080 | 1382 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 20 | 1362 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00711 | Cma-Chr4:3596550 | Cma09g01080 | Cma-Chr9:5734508 | 2.44E-27 | dispersed | |
Cma09g01080 | Cma-Chr9:5734508 | Cma04g02755 | Cma-Chr4:18520175 | 7.78E-06 | dispersed | |
Cma01g01340 | Cma-Chr1:9587798 | Cma09g01080 | Cma-Chr9:5734508 | 2.15E-28 | transposed | |
Cma01g01008 | Cma-Chr1:7299375 | Cma09g01080 | Cma-Chr9:5734508 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g01080 | K03243 | - | csv:101204360 | 1878.6 |