Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01081 ATGTCAACATTGAACAAAAGCAGCTCCCTCAACAATTGCACCAAGCTCCCCCTCCCATCCCATGACCAAATGACATCAACCCACAACAACGTAGTAGATGAAATCCAATCCCAACCCTTCGACTACTCGAAACGCGCTCAATGGTTACGCGCCGCCGTGCTAGGCGCCAACGACGGTCTCGTCTCAACTGCATCTCTCATGATGGGTATCGGAGCTGTCAAGCATGACGTTAAAGCCATGATTCTCACCGGTTTCGCCGGTCTCATTGCCGGTGCCTGCAGCATGGCGATCGGTGAGTTCGTCTCCGTTTACTCTCAATTAGATATAGAAATGGCCCATATAAGAAGAAACAAGGACTTGGAGGAAGAGGAGAGAGAGAAACTGCCAAACCCTCTTCAGGCGGCAGCTGCCTCGGCGTTGGCCTTTTCCATCGGAGCTATGGTGCCGCTGCTGGCGGCTGCGTTCATTAGGGAGTATAGGGTTCGGCTAGGAGTTGTGGTGGCTGCAGTGACCATGGCTCTAGTAGGGTTTGGGTGGCTAGGGGCAGCGTTGGGGAAGGCACCAACGGTGAGGTCGGCGGTGAGGGTCTTGATCGGAGGGTGGACGGCCATGGCTGTGACTTTTGGGTTGACAAAGTTGATTGGATCAAGTGGACTATGA 660 53.79 MSTLNKSSSLNNCTKLPLPSHDQMTSTHNNVVDEIQSQPFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKHDVKAMILTGFAGLIAGACSMAIGEFVSVYSQLDIEMAHIRRNKDLEEEEREKLPNPLQAAAASALAFSIGAMVPLLAAAFIREYRVRLGVVVAAVTMALVGFGWLGAALGKAPTVRSAVRVLIGGWTAMAVTFGLTKLIGSSGL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5748105 5748764 - CmaCh09G010810.1 Cma09g01081 301086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01081 219 Pfam VIT family 124 211 IPR008217 GO:0005384|GO:0030026
Cma09g01081 219 Pfam VIT family 49 125 IPR008217 GO:0005384|GO:0030026
Cma09g01081 219 CDD Nodulin-21 47 188 - -
Cma09g01081 219 MobiDBLite consensus disorder prediction 1 25 - -
Cma09g01081 219 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 21 216 IPR008217 GO:0005384|GO:0030026
Cma09g01081 219 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 21 216 - -
Cma09g01081 219 Coils Coil 104 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01081 Cma-Chr9:5748105 Cma15g00601 Cma-Chr15:2847297 2.57E-89 dispersed
Cma09g01081 Cma-Chr9:5748105 Cma04g02445 Cma-Chr4:16830843 4.84E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01081 K22736 - csv:101210510 357.836