Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01082 ATGCTGAAGGACCCTAATTTCTCGTCGGCGAAGCCACCGTTGGCGGCGGCGGCGATGGACATCGAACAGATGCCGGAGAATCCTTACCGTGGTTCTCACCACCGACGCTCTCACTCCGACACTTCCTTTCGCTTCCCGAACCTCGACGAACTTCTCTTCTTTGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCTCCTTCTTGTGGTGCTGCGATGGTTGTCGATTCGTCTGATTCCAAGTTTTCCGATGATGCCGTTCGCCCTAAGCCGGAGCCGATTGTCTCCGGATCGTTCGGTGGTCACTTGCGGAGCTTGTCCGTGGACTCTGACTTCTTACAGAATCTGGACCTTGGCGGTGATAGTGGGGAGATCGATTCTTTGGCGACAAAAACTCCAGTGAGTGAACATCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCTTCGTTGGAGGCGAATTCAAGCCTAGCGATTGATGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCGGAGTTAGCCCTAATTGACCCGAAAAGGGCTAAAAGGATTCTTGCGAACAGACAATCTGCAGCTCGATCGAAAGAGAGGAAGATGCGGTACGCGAATGAGCTGGAGAGAAAGGTTCAGACACTGCAGTCTGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTTCAGAGAGATACTTCTGGATTAACGGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCTCAGCTTCGAGATGCTTTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAAGCCAGGTCGCATCAGTCAATGGAAATCCTTTCATCCGACCTCTGCAATATCCATCGCCCCGTCCACCTCTACACCATTTTAGTAGCTCGCACGCCCAGCAACCGGGTCAACAGCAGCAGCCACCGTCCATCCTGGCCATAAACCAGCAGCAATCAGATCCGAAATGGACAAACTCATCTCAGCTTCACAGTCATAGTCCGGATGGCCAAGCAAAACCTTAG 1065 52.02 MLKDPNFSSAKPPLAAAAMDIEQMPENPYRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPSCGAAMVVDSSDSKFSDDAVRPKPEPIVSGSFGGHLRSLSVDSDFLQNLDLGGDSGEIDSLATKTPVSEHRPVRHRHSLSMDGSSSSLEANSSLAIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKMRYANELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAASQVASVNGNPFIRPLQYPSPRPPLHHFSSSHAQQPGQQQQPPSILAINQQQSDPKWTNSSQLHSHSPDGQAKP 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5779135 5782902 + CmaCh09G010820.1 Cma09g01082 301087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01082 354 Gene3D - 187 241 - -
Cma09g01082 354 CDD bZIP_plant_RF2 189 238 IPR044759 GO:0003700|GO:0006355
Cma09g01082 354 MobiDBLite consensus disorder prediction 135 158 - -
Cma09g01082 354 Coils Coil 239 259 - -
Cma09g01082 354 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 9 332 - -
Cma09g01082 354 MobiDBLite consensus disorder prediction 307 348 - -
Cma09g01082 354 MobiDBLite consensus disorder prediction 1 41 - -
Cma09g01082 354 SMART brlzneu 184 248 IPR004827 GO:0003700|GO:0006355
Cma09g01082 354 MobiDBLite consensus disorder prediction 27 41 - -
Cma09g01082 354 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 332 - -
Cma09g01082 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700|GO:0006355
Cma09g01082 354 Pfam bZIP transcription factor 188 240 IPR004827 GO:0003700|GO:0006355
Cma09g01082 354 SUPERFAMILY Leucine zipper domain 188 239 IPR046347 GO:0003700|GO:0006355
Cma09g01082 354 Coils Coil 204 231 - -
Cma09g01082 354 MobiDBLite consensus disorder prediction 290 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01000 Cma-Chr1:7248649 Cma09g01082 Cma-Chr9:5779135 6.38E-166 dispersed
Cma04g02444 Cma-Chr4:16823509 Cma09g01082 Cma-Chr9:5779135 7.02E-105 dispersed
Cma09g01082 Cma-Chr9:5779135 Cma20g00307 Cma-Chr20:1509757 9.38E-61 dispersed
Cma09g01082 Cma-Chr9:5779135 Cma04g00106 Cma-Chr4:521220 1.63E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35653 PF00170 bZIP_1 2.10E-07 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01082 K20557 - csv:101207973 543.117