Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01086 ATGGGATCGACTATGTTCGCCACTGTTCCATTCTCCTGCAACTTTCACCAATCAAAGCCTCCTTCCCAAATTCTCCAAAAGGGGGTTCCGGCCGTCGGTGGCGAAAAGGAGAATCGGTCTCCCATTTTGAATCGGAGATCGGTTTTGCTATCCGGCGTTTCTTTGGTTTCTTCTGCGGGTTTGGGGCTGCAGAGCGAGTGTTTGGCTGCGGTTAAGCAAGGTCTTCTTGCTGGGAGGATTCCTGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTGTCAATTGCTGATCTTGGAGGGACAGAGATTGATCTCAGATTCAAAAGCTCAAAGGAAGGTCGTCTGTTCGTCATCGTTGCGCCCGTTCAACGATTTTCCGATGTTATCGGCGACGATGCAACGATTGAAATGGTTGGCCCTCCAGAGAAAGTAATCAGCGCGTTCGGACCAGAAGTGATCGGAGAAAACGTAGAAGGGAAGGTGATGAACATGAGCGTGGCAGAGCATAATGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTTTGATCACAGCAACAGCGGCAGGAAACCGTCTGTATCTATTCAGTGTAACAGGAAATGGGCTTCAATGGAAGAGACATTACAGCGACCTGAAGCGGATAGCGGATTCCTTTCGTGTTGTGTGA 777 49.03 MGSTMFATVPFSCNFHQSKPPSQILQKGVPAVGGEKENRSPILNRRSVLLSGVSLVSSAGLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVISAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYSDLKRIADSFRVV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5839000 5842810 + CmaCh09G010860.1 Cma09g01086 301091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01086 258 PANTHER - 31 258 - -
Cma09g01086 258 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 111 258 - -
Cma09g01086 258 SUPERFAMILY Mog1p/PsbP-like 106 257 IPR016123 -
Cma09g01086 258 Pfam PsbP 114 257 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cma09g01086 258 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC 31 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01086 - - - csv:101208215 410.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00535 Cma-Chr8:3091755 Cma09g01086 Cma-Chr9:5839000 7.46E-09 dispersed
Cma09g01086 Cma-Chr9:5839000 Cma17g00950 Cma-Chr17:7074141 6.63E-09 dispersed
Cma13g00197 Cma-Chr13:1569420 Cma09g01086 Cma-Chr9:5839000 3.70E-06 dispersed
Cma09g01086 Cma-Chr9:5839000 Cma01g00532 Cma-Chr1:2745290 7.59E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1204 Blo01g01325 . Bda01g00690 . Bpe02g00615 . . Bma01g02110 . . . Cma09g01086 . . . Cpe06g00887 . . . . . . . . . . . . . . . . Cone7ag1430 . . . . . . . . . . . . . . . . Cmo09g01095 . . . Car09g00984 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011258 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01086 Cma_Chr09 FPKM 2.139749 2.351241 12.369521 11.645896 18.539871 18.275101 16.262878 7.84608 9.272087 8.752045