Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01087 ATGAAGTGCTTTGAGGAGCGCCCTGTTTCAGTTAGGACGAAGAAAACAATGTCGTTAGTCAGGCCATCTGATCCATCTCCGTTATCATACGGAAGTCGCAAGCTGTACTCGTTGAAAGGAACCAAGAATGCTCCTGACTTGTCTGCTCAAAGATTTGGCTCTGAAATGCATAGGAGTGAGAGCTATGAGAAGTATTTCCTTGACTTCCCGATCGAAGAGCTATCGATTTCTGGCGTTTCGGGCATTTCGAACAATTCTTTTCACCCGAACGCTACTTCGTATGGGCGAACGTGTGATTCAGATTCAGCTTGCCTTGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACTGAAGTTGCAAGAATTGGAGAGGGACCTGTTGGGTGAACCTGATGCTGCTGATTATGGTGTCGAGATGCTTGTAAATGGTCAAGCCATGGAAATCGATAGCGAGTGGGCGAATTCGATTAAAGATGCACTGCTACATGACTCGCCAAACGAATCCTCGTCGACAGATTCTAATTTCAGTACCACTGGCAGCAACAAGGATGCATCTCAGATGTCTTCACAGAATCCTAGAGAAATGCTTTTAGAATGTGCTTTTGCCATCTCGGAAGACAACTTTGACGAAGCGTCAGCCATGATTGAACAGCTCCGAGGTATGGTCTCGGTTCAGGGCGATCCCTCGCAGAGGATCGCTGCGTATATGGTGGAAGGTCTTGCTGCTCGGTTGTTAGCATCAGGAAAATATCTTTATAAAGCTTTGAGATGCAAAGAACCGCCTTCTTCGGACCGTCTCGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCTTGTTTCAAATTCGGCTTTATGGCTGCAAATTGTGCCATTATCGAGGCGGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAATTTGATTCAGATGCTAGCAACTCAGCCAGGGAAGCCACCACACTTGAGGTTAACAGGGGTCGATGATCCCGAATCAGTCCATCGCCCCGTCGGAGGTCTTAAACACATTGGACAAAGACTCGAACAACTGGCAAAAGCGTTACGAGTTCCATTTGAATTTCAAGCAATTGCCTCGAACACTTCTGATGTCACTCCCTCGATGCTCGCCTCCCGCCACGGAGAAGCAGTCATAGTCAACTTCGCTTTCCTGCTTCACCACATGCCAGATGAAAGTGTCTCAACCGTAAATCTACGAGACAAGCTTCTCCGAATGGTTAAGAACTTAAACCCGAAACTAGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTTTCGAGATTCGTCGAAACCTATAACTACTTTGCAGCTGTCTACAACACTCTCGATGCGACACTCCCGAGAGATAGTCAAGACCGAATCAATGTAGAGAGGCAATGCTTGGCCAAGGACATAGTCAACATCGTAGCTTGTGAAGGCGAGGACAGAGTGGAGAGATACGAAGTCGCCGGGAAATGGCGGGCAAGAATGACGATGGCTGGGTTCAGTTCCTGTACGATGAGCCAAAACGTGACCGACCCGATTCGAAATCTTATCGGGGAGTATTGCGAGAGATTCAAGATGTATGAAGAAATGGGCACAGTTCATTTTGGATGGGAAGAGAAAAGCTTGATTATTACTTCAACATGGAGGTAA 1704 46.71 MKCFEERPVSVRTKKTMSLVRPSDPSPLSYGSRKLYSLKGTKNAPDLSAQRFGSEMHRSESYEKYFLDFPIEELSISGVSGISNNSFHPNATSYGRTCDSDSACLESTSPEQLDFEDDQVRLKLQELERDLLGEPDAADYGVEMLVNGQAMEIDSEWANSIKDALLHDSPNESSSTDSNFSTTGSNKDASQMSSQNPREMLLECAFAISEDNFDEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLASGKYLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYINLIQMLATQPGKPPHLRLTGVDDPESVHRPVGGLKHIGQRLEQLAKALRVPFEFQAIASNTSDVTPSMLASRHGEAVIVNFAFLLHHMPDESVSTVNLRDKLLRMVKNLNPKLVTVVEQDMNTNTTPFFSRFVETYNYFAAVYNTLDATLPRDSQDRINVERQCLAKDIVNIVACEGEDRVERYEVAGKWRARMTMAGFSSCTMSQNVTDPIRNLIGEYCERFKMYEEMGTVHFGWEEKSLIITSTWR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5848091 5851085 + CmaCh09G010870.1 Cma09g01087 301092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01087 567 MobiDBLite consensus disorder prediction 166 194 - -
Cma09g01087 567 Pfam GRAS domain family 198 567 IPR005202 -
Cma09g01087 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 107 566 IPR005202 -
Cma09g01087 567 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 107 566 IPR030011 GO:0003700|GO:0005634
Cma09g01087 567 ProSiteProfiles GRAS family profile. 188 567 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01007 Cma-Chr1:7294187 Cma09g01087 Cma-Chr9:5848091 0 dispersed
Cma08g00189 Cma-Chr8:1066984 Cma09g01087 Cma-Chr9:5848091 8.59E-48 dispersed
Cma09g01087 Cma-Chr9:5848091 Cma16g00944 Cma-Chr16:7274694 2.52E-142 dispersed
Cma09g01087 Cma-Chr9:5848091 Cma20g00670 Cma-Chr20:3070596 1.34E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35654 PF03514 GRAS 1.20E-127 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01087 - - csv:101206511 949.503