Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g01089 | ATGAAGTCGATGCGTCTCAACTCCTTCACATGTTCTTCCCGGCTTCCATCCTTCTTAAATCCACACAATGTTGCCAGAATCGCCTCCTATTCCACTCCAGATTGCATTTCGAACCAACTTTTATCCGAAGATCACAATACCCATTCAAAATTTCTGCAAGTTTGCTTGCAGCACTGCAGGAGAATCAAACCCCACAACCTGTTCGATGAAAAGCCTAAACCAGTTCTGCAAGCATTGAGAACAGCGAAGGTCATTCATTCGAAGAGTTTGAAGATTGGAGTTGGGCTCAATGGGCTACTAGGCAATGCAATTGTTGATCTCTATGTCAAATGCGGCAATGTGGATTATGCTCAGAAGGTATTTTCCCGGCTGGAGAAGAAGGATGTATTTGCCTGGAACTCGGTGCTTTCTATGTACTCTAAGCATGGGTTATTTGCAACTGTTGTTGAATCTTTTGTGTCTATGTGGAATGATGGGGTGCGGCCTAATGAGTTCACGTTTGCGATGGTTTTATCTGCTTGTTCTAGGTTGTTGGATGTTAACTATGGTAGACAAGTGCATTGTGGTGTTTTTAAGATGGGGTTTGGGTTTAGTTCTTTTTGTCAAGGTGGGCTAATTGATATGTATGCCAAATGCCATGATTTAAGAGATGCTCGGTTGGTGTTTGATGGGGCACTTAATATGGATACTGTTTCATGGACAGCCTTGATTGCTGGGTATGTTCAAGATGGTTTACCTGAGGAGGCAGTCAAGGTGTTTGATAGAATGCAGACAGTTGGACTTGTACCTGATCAGATAGCGCTTGTAACTGTTATAAATGCTTATGTTGCTCTAGACAGGCTTGGTGATGCTCGTAAGTTGTTTGCCCAGTTGCCCAATCCTAATATTGTAGCTTGGAATGTGATGATTTCAGGGCATGCAAAGAGAGGATTTGCATTGGAAGCTATTTCGTTTTTTCTTGAATTAAAGAGAACTGGCCTAAAAGCCACTAGATCTACTATAGGAAGTGTTTTGAGTGCAATTGCTAGTTTATCGATGCTGAATTATGGCTTAATGGTTCATGCTCAGGTGATTAAGGAAGGGTTACATGACAATGTGTATGTAGGAAGTGCATTGGTGAATATGTATGCTAAATGTGAAAAAATGGATGCTGCGACTGAAGTGTTCAATTCTTTAGAAGAGAGAAATATCGTCTTGTGGAATGCTATGCTTGCAGGTTTTGCGCAGAACGGGCTTGCTCATGAAGTGATGGATTTGTTCTCATATATGAAACGGTATGGACCTCAGCCTGATGAGTTTACCTTCACTAGTATTTTCAGTGCATGTGCCTCCTTGCAGTATCTCGATTTCGGTCGTCAACTTCATAATGTTATGATCAAGAACAAGTTTGTATCTAATCTATTTGTTGCAAATGCGTTGGTAGACATGTATGCTAAATCTGGGGCTTTAAAGGACGCAAGAAAACAGTTTGAGTTGATGAAGATTCATGACAATGTTTCATGGAATGCAATAATTGTAGGATATGTTCAGGAAGAGTATAATGGTGAAGCTTTCTTCATGTTTCGAAGAATGGTTTGCAATGGAGCTCTTCCAGATGAGGTGTCTTTAGCTACTATAGTGAGTGCTTGTGCAAATGTTCAGGAGTTGAAACCAGGGCAACAATGTCACTGTCTCTTAGTTAAAGTTGGTTTAGATACAAGCATTTGTGCTGGAAGTTCCCTCATTGACATGTATGTCAAGTGTGGGGTTCTTTCAGCAGCTCGGGGTGTCTTTTATTCTATGCCGTGTCGAAGTGTCGTCTCAGTAAATGCTCTGATTGCTGGCTACACTGTGAACCATTTAGAGGAAGCTATTTATCTATTTCAAGAGATGCAGATGGTTGGACTTAAACCTACGGAAGTCACATTTGCTGGGCTTTTAGATGGATGTGATGGAGCATCTTTGCTGAAAATAGGAAGGCAAGTTCACTGTCAAGTTATTAAGAGGGGTTTTCTGTTAGGTAGGGAAATGGTGTGTGTATCTCTCTTGTGCATGTATTTGAGCTCCCAAAGACTCTCAGAATCGGAAACACTCTTCTCTGAGTTGCAGTACCCAAAAAGTTTAGTTTTATGGACTGCTTTCATTTCAGGATGTGCACAAAACAATCACTATGAGAAGGCTTTGCTATTCTATCAACATATGCGATCCGAGAATATCTTACCTGACCAAGCAACGTTTGCGAGTGTTCTTCGAGCATGCTCTGGATTGTCTTCTCTACAAAACGGTCAAGAGATTCATTCCCTTATCTTCCATACGGGCTTTAACATGGATGAAATCACCTGTAGTTCCCTTATCGATATGTATGCAAAATGTGGTGATGTTGGAAGTTCTGTTCAAGTTTTTCATGAAATGTGTTGTAGAAATAGTGTTGTTTCTTGGAACTCCATGATAGTTGGACTTGCAAAGAATGGCTATTCAGAAGAAGCACTTGAAATTTTCAGAGAGATGGAGCAACAATCTATCATGCCTGATGATGTTACGTTCCTTGGTGTTCTTTCTGCCTGTAGCCATGCTGGAAGAGTGTTCGAAGGCCGAAAGATCTTCGACGTGATGGTTAGCCATTACAGGTTACAGCCGAGAGTTGATCATTTGGGATGTATGGTAGACATTCTTGGGAGATGGGGTTTCCTTAATGAAGCAGAGGAGTTCATCAACAGACTCGGATGCAAAGCGGATCCGATGCTCTGGTCAACTTTGCTCGGAGCTTGCAGAAAGCATGGAGATGAAGTTAGAGGGAGGCGTGCCGCTGAGAAACTTATGGAATTGAAACCACAAAGTTCTTCACCCTATGTGCTGCTCTCTAGCATATACGCTGCATCAGAGAATTGGAAACAAGCCGACTCTTTAAGGAGGGAAATGAAATCAAAGGGAGTGAAAAAGTTGCCCGGATATAGCTGGATAGAGCCAGGAAGAAGCGTACGAGGCAGCTCGTATACGATTCAGGAGCCAAACTCGAACACAAGGACTTAG | 3009 | 41.97 | MKSMRLNSFTCSSRLPSFLNPHNVARIASYSTPDCISNQLLSEDHNTHSKFLQVCLQHCRRIKPHNLFDEKPKPVLQALRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKVFSRLEKKDVFAWNSVLSMYSKHGLFATVVESFVSMWNDGVRPNEFTFAMVLSACSRLLDVNYGRQVHCGVFKMGFGFSSFCQGGLIDMYAKCHDLRDARLVFDGALNMDTVSWTALIAGYVQDGLPEEAVKVFDRMQTVGLVPDQIALVTVINAYVALDRLGDARKLFAQLPNPNIVAWNVMISGHAKRGFALEAISFFLELKRTGLKATRSTIGSVLSAIASLSMLNYGLMVHAQVIKEGLHDNVYVGSALVNMYAKCEKMDAATEVFNSLEERNIVLWNAMLAGFAQNGLAHEVMDLFSYMKRYGPQPDEFTFTSIFSACASLQYLDFGRQLHNVMIKNKFVSNLFVANALVDMYAKSGALKDARKQFELMKIHDNVSWNAIIVGYVQEEYNGEAFFMFRRMVCNGALPDEVSLATIVSACANVQELKPGQQCHCLLVKVGLDTSICAGSSLIDMYVKCGVLSAARGVFYSMPCRSVVSVNALIAGYTVNHLEEAIYLFQEMQMVGLKPTEVTFAGLLDGCDGASLLKIGRQVHCQVIKRGFLLGREMVCVSLLCMYLSSQRLSESETLFSELQYPKSLVLWTAFISGCAQNNHYEKALLFYQHMRSENILPDQATFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGDVGSSVQVFHEMCCRNSVVSWNSMIVGLAKNGYSEEALEIFREMEQQSIMPDDVTFLGVLSACSHAGRVFEGRKIFDVMVSHYRLQPRVDHLGCMVDILGRWGFLNEAEEFINRLGCKADPMLWSTLLGACRKHGDEVRGRRAAEKLMELKPQSSSPYVLLSSIYAASENWKQADSLRREMKSKGVKKLPGYSWIEPGRSVRGSSYTIQEPNSNTRT | 1002 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5864608 | 5867616 | + | CmaCh09G010890.1 | Cma09g01089 | 301094 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g01089 | 1002 | Pfam | PPR repeat | 772 | 800 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat | 297 | 326 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat | 471 | 494 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat | 499 | 528 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat | 572 | 597 | IPR002885 | - | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 229 | 263 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 772 | 804 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 702 | 735 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 432 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 297 | 329 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 804 | 837 | IPR002885 | - | |
| Cma09g01089 | 1002 | TIGRFAM | PPR: pentatricopeptide repeat domain | 231 | 264 | IPR002885 | - | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 802 | 836 | IPR002885 | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 595 | 666 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 205 | 279 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 670 | 762 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 89 | 214 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 496 | 595 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 766 | 982 | - | - | |
| Cma09g01089 | 1002 | PANTHER | OSJNBB0070J16.5 PROTEIN | 279 | 495 | - | - | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 770 | 800 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 229 | 275 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 395 | 443 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 700 | 746 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 598 | 643 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 802 | 849 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | PPR repeat family | 127 | 175 | IPR002885 | - | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 595 | 666 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 205 | 279 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 496 | 595 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 766 | 982 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 279 | 495 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 89 | 214 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | PANTHER | OS07G0578800 PROTEIN-RELATED | 670 | 762 | IPR045215 | GO:0003723|GO:0009451 | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 700 | 734 | IPR002885 | - | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 556 | 653 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 447 | 555 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 654 | 782 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 347 | 446 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 497 | 531 | IPR002885 | - | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 204 | 346 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 820 | 999 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | Gene3D | Tetratricopeptide repeat domain | 34 | 190 | IPR011990 | GO:0005515 | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Cma09g01089 | 1002 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 128 | 162 | IPR002885 | - | |
| Cma09g01089 | 1002 | Pfam | E motif | 921 | 981 | IPR046848 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g01089 | - | - | - | cmax:111473755 | 2014.19 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g01089 | Cma-Chr9:5864608 | Cma18g01233 | Cma-Chr18:9689109 | 1.15E-29 | dispersed | |
| Cma09g01089 | Cma-Chr9:5864608 | Cma07g00774 | Cma-Chr7:3479064 | 2.06E-61 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1213 | . | Blo12g01108 | . | Bda03g00030 | . | Bpe04g00020 | Bma04g00028 | . | . | Cmo12g00334 | . | Cma09g01089 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo09g01097 | . | . | . | Car09g00987 | . | . | Bhi09g01512 | . | . | . | . | . | . | Cla09g00917 | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0011120 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 3 | 1 | 0 | 1 | 0 | 1 | 27 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma09g01089 | Cma_Chr09 | FPKM | 0.766368 | 1.14674 | 1.339274 | 0.876535 | 3.11027 | 3.619724 | 3.787059 | 1.542826 | 1.44922 | 1.362036 |