Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01113 ATGGATGGGATTGGACTTCGATATGTGGGCTCTCATTGCTCAATGTCTGAGATGGATGATCATGATTTTTCTCGATTTCACGATAAGCCTAAGCTCAATATTGAGAGGCAAAGATCATTTGATGAGAGGTCCCTCAGCGAGCTGTCCATCATCCTTGCTAAGGGAGGCTTGGACAACTTCGAGAGCTCCTATTCACCTGGTGGAAGGTCAGGATTTGATACCCCAGCTTCATCTACCAGAAACTCATTTGAGCCCCACCCAATGATCGCTGAAGCATGGGACGCTTTGCGGAGATCCTTGGTGCATTTTCGGGGCCAACCAGTTGGAACTCTTGCAGCTATTGATCATGCCTCAGAGGAAGTTTTGAATTATGATCAGGTTTTTGTTCGGGATTTTGTACCAAGTGCTTTGGCTTTCCTGATGAATGGGGAACCTGAAATTGTTAAGAACTTCCTGTTAAAGACTCTGCAGCTTCAGGGATGGGAAAAAAGAATAGACAGATTCAAGCTTGGGGAAGGTGCAATGCCAGCTAGCTTTAAGGTTCTTCATGATCCTGTTAGAAAAACCGATACCATTGTTGCTGATTTTGGAGAGAGTGCGATAGGAAGAGTTGCTCCTGTTGATTCTGGATTCTGGTGGATCATTCTGCTCCGTGCTTATACAAAGTCAACTGGGGATCTAACTCTGGCTGAAACACCAGAGTGTCAGAAGGGAATGAGACTTATTTTAACTTTATGTCTGTCGGAGGGGTTCGATACATTCCCAACTCTACTTTGTGCTGATGGTTGCTCCATGATTGATAGAAGAATGGGTATATATGGTTATCCTATAGAAATTCAAGCCCTTTTCTTTATGGCCTTGAGATGTGCTCTGGCTATGCTAAAACATGATGCTGAAGGAAAAGAGTGCATAGAGCGTATTGTGAAGCGTCTGCATGCTTTAAGTTATCACATGAGGAGTTATTTCTGGCTTGATTTCCAGCAACTAAATGACATCTACCGTTATAAAACAGAAGAATATTCACATACAGCTGTAAATAAGTTTAATGTCATCCCTGATTCTATCCCAGATTGGGTGTTTGATTTTATGCCGACACGTGGCGGGTATTTTGTTGGTAACGTTAGTCCTGCAAGAATGGATTTCAGATGGTTTACTTTAGGTAATTGTGTTGCAATTCTATCATCTCTTGCCACCCCTGAGCAATCAATGGCTATTATGGATCTTATTGAAGCACGCTGGGAGGAGCTGGTTGGAGAAATGCCATTGAAAATATCATATCCTGCTATAGAAAGCCATGAGTGGCGAATTACTACTGGTTGTGATCCCAAGAATACCAGGTGGAGCTACCATAATGGTGGATCTTGGCCAGTGCTACTATGGCTGCTAACAGCCGCTTGCATTAAAACCGGACGACCGCAGATTGCTAGAAGAGCCATCGAGCTTGCCGAGAGTCGTTTGCTGAAGGATAGTTGGCCTGAATACTATGATGGAAAGTTAGGAAGATACATAGGAAAACAAGCTAGGAAATACCAGACATGGTCGATAGCAGGATACTTGGTTGCAAAGATGATGTTGGAAGATCCATCACATTTGGGGATGATTTCACTTGAAGAGGACAGGCAAATGAAACCACTGATCAAGAGATCATCATCATGGACCTGCTGA 1665 43.42 MDGIGLRYVGSHCSMSEMDDHDFSRFHDKPKLNIERQRSFDERSLSELSIILAKGGLDNFESSYSPGGRSGFDTPASSTRNSFEPHPMIAEAWDALRRSLVHFRGQPVGTLAAIDHASEEVLNYDQVFVRDFVPSALAFLMNGEPEIVKNFLLKTLQLQGWEKRIDRFKLGEGAMPASFKVLHDPVRKTDTIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLAETPECQKGMRLILTLCLSEGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQALFFMALRCALAMLKHDAEGKECIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPTRGGYFVGNVSPARMDFRWFTLGNCVAILSSLATPEQSMAIMDLIEARWEELVGEMPLKISYPAIESHEWRITTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIELAESRLLKDSWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDRQMKPLIKRSSSWTC 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6120191 6130515 - CmaCh09G011130.1 Cma09g01113 301118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01113 554 Pfam Alkaline and neutral invertase 92 528 IPR024746 GO:0033926
Cma09g01113 554 Gene3D - 117 523 IPR012341 GO:0005975
Cma09g01113 554 PANTHER ALKALINE/NEUTRAL INVERTASE CINV2 1 553 - -
Cma09g01113 554 PANTHER - 1 553 IPR024746 GO:0033926
Cma09g01113 554 SUPERFAMILY Six-hairpin glycosidases 105 521 IPR008928 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01113 - - - csv:101214631 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01113 Cma-Chr9:6120191 Cma12g01016 Cma-Chr12:8077406 0 dispersed
Cma11g01397 Cma-Chr11:9196779 Cma09g01113 Cma-Chr9:6120191 0 transposed
Cma01g00977 Cma-Chr1:6810676 Cma09g01113 Cma-Chr9:6120191 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1407 . . . . . . . . . . . Cma09g01113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01016 Cmo09g01119 . . . Car09g01002 . . . . . . . . . . . . . . . . . . . Cme01g00805
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01113 Cma_Chr09 FPKM 22.02704 22.360636 10.008242 11.236562 19.975803 19.166378 19.304451 13.786936 12.269676 12.506214