Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01116 ATGGCTTTCAGTTCCGCAGTAGCATCGCAGCTCCACATTTTCCGATCCTCCAATCTCCGATTTCCGGATTCCAACAAATCCTGGAATCGGGGACGGCGACGTACAGCGCCCGCCGTAATCCGGTGCGAGAAGGTCGTTGGAATCGACTTAGGAACGACGAACTCGGCGGTCGCGGCGATGGAGGGAGGGCAACCGACGATCGTGACGAACGCGGAGGGACAGAGGACGACGCCGTCGGTTGTGGCGTACACGAAGACTGGCGATCGGCTAGTCGGTCAGTTGGCGAAGCGGCAGGCGGTGGTTAATCCGGAGAATACTTTCTTCTCCGTGAAGAGATTTATTGGAAGGAAGATGGCGGAGGTGGACGAGGAGGCTAAGCAAGTCTCTTACAAGGTTATCGCCGATGAGAATGGGAATGTGAAGCTCGATTGCCCTGCCGTCGGCAAGCAATTCGCCGCCGAGGAGATTTCCGCTCAGGTTTTAAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAATGATCAAGTAGGAAAAGCTGTAGTCACAGTCCCAGCATATTTCAATGACTCGCAAAGGACAGCGACGAAAGACGCTGGTCGAATTGCCGGTCTCGAAGTTCTTCGCATCATCAATGAACCAACTGCTGCTTCTCTTGCTTATGGCTTTGACAAGAAAACCAACGAGACTATTCTCGTTTTCGACCTCGGGGGTGGAACGTTTGATGTCTCAGTTCTTGAGGTTGGAGATGGCGTGTTTGAGGTTCTTTCTACTTTAGGTGATACACATTTGGGTGGTGATGATTTTGACAAGAGGATTGTCGATTGGCTTGCCGAGAGCTTTAAGAGGGACGAAGGAATCGATCTTTTGAAAGACAAACAAGCGCTGCAACGTCTTACGGAAACGGCCGAGAAGGCGAAGATTGAGCTATCATCTTTAACACAGACCAATATTAGTTTGCCATTTATCACTGCGACCCGAGATGGTCCGAAACATATCGATACTACACTTACTAGGGTGAAGTTTGAAGAGTTGTGTTCAGACTTGCTAGATAGGCTGCGATCGCCGGTGGAAACGGCTCTAAAGGACGCGAAGTTGTCGTTCAAAGAAATAGATGAAGTCATCCTTGTCGGGGGCTCGACTCGTATCCCAGCAGTTCAAGAGCTTGTTAAGAAAATGACAGGTAAAGAACCGAACATGACAGTAAATCCCGATGAAGTGGTTGCGCTCGGGGCTGCAGTTCAGGCTGGTGTTTTAGCTGGAGATGTCAGTAACATTGTTCTCTTAGATGTCACACCGCTCTCTCTCGGTTTGGAAACTTTGGGCGGAGTAATGACCAAAATCATTCCGAGGAACACGACGTTACCAACATCCAAATCTGAGGTGTTTTCGACAGCAGCAGATGGACAAACAAGTGTTGAGATTAATGTATGTCAAGGCGAACGAGAGTTCGTTCGGGACAATAAGTCTCTTGGACGAATTCTCCTCGACGGTATCCCACCCGCACCCCGCGGCGTTCCTCAGATCGAAGTGAAATTCGACATCGACGCTAATGGTATTCTCTCTGTCACTGCCATTGACAAGGGAACTGGGAAGAAGCAAGACATCACAATCACTGGCGCGAGTACTCTACCAAGTGACGAGGTGAATAGAATGGTTAAAGAAGCAGAGAAGTTCGCAAAGGAAGATAAAGAGAAGAGGGATGCCATAGACACAAAGAACCAAGCAGATTCTGCTGTGTACCAAACTGAAAAACAGCTAAAGGAGCTCGGAGACAAAATTCCCCAATCCGTTCGAGAGGCTGTCGAGGCTAAGCTCAACGTCCTTAAGGACGCCATTGCTAACGGGTCGACCGAAAAAATCAAAATCTCCATGACTGCACTGAATCAAGAAGTAATGCAGATGGGGCAGTCCCTCTACAGCCAAGGAGCAGCCTCCAGCGACGGGACTGCATCCGGAACTCAGTCCGCTTCATCGAGATCAGCTGGAGAAACTGATGGCGATGTTATCGACGCAGATTTCGTGGATAGCGAATGA 2034 49.51 MAFSSAVASQLHIFRSSNLRFPDSNKSWNRGRRRTAPAVIRCEKVVGIDLGTTNSAVAAMEGGQPTIVTNAEGQRTTPSVVAYTKTGDRLVGQLAKRQAVVNPENTFFSVKRFIGRKMAEVDEEAKQVSYKVIADENGNVKLDCPAVGKQFAAEEISAQVLRKLVDDASKFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFDKKTNETILVFDLGGGTFDVSVLEVGDGVFEVLSTLGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATRDGPKHIDTTLTRVKFEELCSDLLDRLRSPVETALKDAKLSFKEIDEVILVGGSTRIPAVQELVKKMTGKEPNMTVNPDEVVALGAAVQAGVLAGDVSNIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVCQGEREFVRDNKSLGRILLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVNRMVKEAEKFAKEDKEKRDAIDTKNQADSAVYQTEKQLKELGDKIPQSVREAVEAKLNVLKDAIANGSTEKIKISMTALNQEVMQMGQSLYSQGAASSDGTASGTQSASSRSAGETDGDVIDADFVDSE 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6161667 6166365 + CmaCh09G011160.1 Cma09g01116 301121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01116 677 Gene3D - 221 402 - -
Cma09g01116 677 PANTHER HEAT SHOCK PROTEIN 70KDA 27 653 IPR013126 GO:0005524|GO:0140662
Cma09g01116 677 SUPERFAMILY Actin-like ATPase domain 44 224 IPR043129 -
Cma09g01116 677 Pfam Hsp70 protein 45 639 IPR013126 GO:0005524|GO:0140662
Cma09g01116 677 PANTHER STROMAL 70 KDA HEAT SHOCK-RELATED PROTEIN, CHLOROPLASTIC-LIKE 27 653 - -
Cma09g01116 677 ProSitePatterns Heat shock hsp70 proteins family signature 1. 48 55 IPR018181 -
Cma09g01116 677 TIGRFAM prok_dnaK: chaperone protein DnaK 44 639 IPR012725 GO:0005524|GO:0006457|GO:0051082
Cma09g01116 677 ProSitePatterns Heat shock hsp70 proteins family signature 2. 232 245 IPR018181 -
Cma09g01116 677 Gene3D Actin; Chain A, domain 4 265 352 - -
Cma09g01116 677 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Cma09g01116 677 SUPERFAMILY Actin-like ATPase domain 227 418 IPR043129 -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 44 57 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 72 84 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 95 103 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 179 199 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 238 248 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 370 386 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 401 421 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 424 443 - -
Cma09g01116 677 PRINTS 70kDa heat shock protein signature 505 521 - -
Cma09g01116 677 MobiDBLite consensus disorder prediction 638 662 - -
Cma09g01116 677 Gene3D - 46 415 - -
Cma09g01116 677 Gene3D - 543 643 IPR029048 -
Cma09g01116 677 CDD HSPA9-Ssq1-like_NBD 42 418 - -
Cma09g01116 677 Coils Coil 288 315 - -
Cma09g01116 677 MobiDBLite consensus disorder prediction 638 677 - -
Cma09g01116 677 Hamap Chaperone protein DnaK [dnaK]. 42 676 IPR012725 GO:0005524|GO:0006457|GO:0051082
Cma09g01116 677 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 420 576 IPR029047 -
Cma09g01116 677 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 541 IPR029047 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01116 Cma-Chr9:6161667 Cma15g01445 Cma-Chr15:9147002 0 dispersed
Cma09g01116 Cma-Chr9:6161667 Cma16g00284 Cma-Chr16:1341110 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01116 K03283 - csv:101212307 1195.26