Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01139 ATGGCGGATATGATGCTGATGAAAGACATTGAGGATACGGCTGATCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGATGCCATTCGTCTCCCTCCCGGCGAGGATTTCGGAATCATTAGCGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATAGGAGTTATTAAGGATGATGGCCTGTGGATGCCTGTTGATCCTTCTACACAAAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGATAGATTTATGAAAGTCCCAGATGAGTGGGCTCCTCCTGAAATCAACCCATATACTCCTGGGGAGAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTTTTCTGGAACGATGCTAGACATTTGAAGCCTGAGCCAGTCTACAAGCGTCCATTCTGGACCGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAGTTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAAGTACCTTCAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAAAAATATCTGGTAACATACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTTCCACTGGAGGAACTGGTGGTGTTGCCGGCTTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGAAGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACCGAGACTTTCTCTCTTATCGACAAAAAGTCTTTGAAGGTCGAAAATGTTATGGATTTTTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCGAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACGAAGACAAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGAATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAACGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTCATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCAATGCGAAGTACTCACAACAGTGGCCGAGTGTCGAAACTTGCAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGAAGATTCATTCTTCTTGCTGGCTTGAAAGGTTTCAATGGGCAGTTGGAGTTCTACAACGTCGATGAACTGGAGACAATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTACGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAATGGTTTTAACATATGGTCCTTTAATGGAAAGCTCCTCTATCGAATCTTGAAGGATCATTTCTTTCAGTTCGCATGGCGACCAAGGCCACCATCCTTCTTGACCCCGGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGACGTATCTATGCTACTGAGTGAGCAGGAGCGCGAGAAACGGAGAATGTTGAAGGAGGAGTGGGAGAAGTGGTTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGACAGAAGCTTCGGGATGGTGAAGCCAGCGATGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTTTGGATGTGACAGAGGAAGTTTTGTCGGATGATTTTGATCAGGAATGA 2160 44.58 MADMMLMKDIEDTADRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPSTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATVHRQGAAVWGGASTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFSTGGTGGVAGLSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLATLKGKQANALFWSPAGRFILLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRRMLKEEWEKWLNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVTEEVLSDDFDQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6456947 6461480 - CmaCh09G011390.1 Cma09g01139 301144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01139 719 CDD RRM_eIF3B 59 143 IPR034363 -
Cma09g01139 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cma09g01139 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cma09g01139 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma09g01139 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Cma09g01139 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma09g01139 719 Gene3D - 182 382 IPR015943 GO:0005515
Cma09g01139 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Cma09g01139 719 Gene3D - 415 622 IPR015943 GO:0005515
Cma09g01139 719 Coils Coil 687 707 - -
Cma09g01139 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cma09g01139 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma09g01139 719 Gene3D - 55 154 IPR012677 -
Cma09g01139 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Cma09g01139 719 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01139 Cma-Chr9:6456947 Cma14g01439 Cma-Chr14:11024137 8.29E-21 dispersed
Cma09g01139 Cma-Chr9:6456947 Cma11g00027 Cma-Chr11:121811 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01139 K03253 - csv:101213144 1410.97