Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01142 ATGATAGAGAGATTGATGGGTGTGATCGATTTTTCAAACCCTTGCACCCGTATCCTTCCTGCAGCTGAGGCATCGCGTCGAGCCAATTGCTCAGTTGCTGAGCGAAGGAAGTGGGCTGTTGCTATGACATCTCAAATTCCAGTAGAACAGGTTCATGTGAGTCAACAAAGGTTGGCTGGTGACTCTTTTATCCGACCCCATTTGAGGAAATTGTCTCCTTATCAGCCCATTCTTCCTTTTGAGGTTCTTGAAGCCTTGGGAACAATGAAATTCCCAAACATCTATCCCGATCCTGAAAGTCGTCGATTGCGAGCAGCGCTCGCCATAGATTCTGGTCTCGAATCAGATTATATTCTTGTGGGATGTGGTGCAGATGAGCTCATCGATCTGATTATGCGATGTGTGTTGGATCCTGGTGATAAAATTGTCGACTGCCCTCCTACCTTCACAATGTATGAATTTGATGCTGCTGTCAATGGTGCTCTTGTGATTAAAGTTCCAAGGAAGCCAGACTTTTCTTTGAATGTGGATCTCATAAAAGATGTTGTTGAGAAGGAAAAACCAAAGTGTATATTCCTCACGTCTCCTAATAATCCTGATGGGAGTTTAATTAGTGATGAAGTTCTGTTGAAAATTCTTGAGCTCCCCATACTAGTTGTTCTAGATGAAGCATATATAGATTTTTCTTCAGTTGAATCAAAGATGCAGTGGGTGAAGAAATATGACAACCTGATTGTACTTAGAACTTTTAGCAAAAGAGCAGGTTTGGCTGGACTTCGTGTTGGGTATGGGGCGTTTCCGTTGAGTATCATTGAATATCTCTGGCGAGCTAAGCAACCATATAATGTGTCTGTTGCTGCTGAAATTGCTGGGTGTGCAGCATTGGAGAACCCCTCCTACTTAGAGAAGGTAAAAAATGATTTGGTACAAGAACGTGAGAGGCTGTTTAATCTTCTAAAGGATGTGCCATTTTTAAATCCATATCCAAGTCACTCTAATTTCATCCTTTGCGAGGTGACTTCAGGAAAGGATGCAAAGAAATTAAAGGAGGACCTAGCAAAAATGGGGGTGATGATTCGTCACTACGATAAGAAAGAGTTAAAAGGCTATGTTCGTGTTACCGCCGGGAAGCCCGAACACACCGATGCTTTGATGGACTGCCTTCGACGTTTATCGTAA 1179 42.75 MIERLMGVIDFSNPCTRILPAAEASRRANCSVAERRKWAVAMTSQIPVEQVHVSQQRLAGDSFIRPHLRKLSPYQPILPFEVLEALGTMKFPNIYPDPESRRLRAALAIDSGLESDYILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVIKVPRKPDFSLNVDLIKDVVEKEKPKCIFLTSPNNPDGSLISDEVLLKILELPILVVLDEAYIDFSSVESKMQWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEIAGCAALENPSYLEKVKNDLVQERERLFNLLKDVPFLNPYPSHSNFILCEVTSGKDAKKLKEDLAKMGVMIRHYDKKELKGYVRVTAGKPEHTDALMDCLRRLS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6476356 6484814 - CmaCh09G011420.1 Cma09g01142 301147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01142 392 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED 81 391 - -
Cma09g01142 392 CDD AAT_like 95 390 - -
Cma09g01142 392 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 43 83 - -
Cma09g01142 392 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 81 391 - -
Cma09g01142 392 SUPERFAMILY PLP-dependent transferases 85 391 IPR015424 -
Cma09g01142 392 Gene3D - 95 296 IPR015421 GO:0003824
Cma09g01142 392 Gene3D Aspartate Aminotransferase, domain 1 79 385 IPR015422 GO:0003824
Cma09g01142 392 TIGRFAM hisC: histidinol-phosphate transaminase 90 390 IPR005861 GO:0000105|GO:0004400
Cma09g01142 392 Coils Coil 301 321 - -
Cma09g01142 392 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED 43 83 - -
Cma09g01142 392 Hamap Histidinol-phosphate aminotransferase [hisC]. 63 392 IPR005861 GO:0000105|GO:0004400
Cma09g01142 392 Pfam Aminotransferase class I and II 93 385 IPR004839 GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01142 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] - csv:101214429 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01689 Cma-Chr6:10398947 Cma09g01142 Cma-Chr9:6476356 0 dispersed
Cma06g01690 Cma-Chr6:10402824 Cma09g01142 Cma-Chr9:6476356 1.01E-56 dispersed
Cma09g01142 Cma-Chr9:6476356 Cma17g01051 Cma-Chr17:7564013 2.20E-10 dispersed
Cma09g01142 Cma-Chr9:6476356 Cma09g00806 Cma-Chr9:3934457 6.47E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1399 . . . . . . . . . . . Cma09g01142 . . . . . . . . . . . . . . . . . . . Cone4ag1222 Cone7ag0913 . . . . . . . . . . . . . . . . Cmo09g01152 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003567 1 1 1 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01142 Cma_Chr09 FPKM 18.225883 21.953352 12.598161 11.200572 26.497166 24.208141 29.845436 5.845132 6.956691 6.989614