Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01147 ATGGAGCCTGAAGATAGTTTATGTAGCTCTGAAGTTTGGGCAAAATCTTCATCGTTTCCTAATATTAATATTCAGCAACCTTCACAGAAATGGGTAGATCCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTCGAAGAACGGATCGAATCGAAGGCCTCCCTAATGTGTAGCCCAAATCAGCGAATCGAAATCTTAGATAAAGATAGTAATGAGCTGAATGCAGGACTTCTAGCTAGTAAAGTTCAAGATTGGGACCCGAGAGCGATGCTTAATAATCTTTCATTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTCGGCCGGAGGAACCAAGCCTTGGGGAGTCCCGATGAACTCGTAGTTCAGCAACAACAGCTGATAACTGCTGATCTAACTTCGATTATTGTTCAGTTAATCTCGACAGCTGGTAGTCTGCTTCCTTCTGTAAAGCATAAGTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGTTCGAGCAGCTCGACAGGGTTCTTTTTGCGTCTGGACCTAGGACTAATAGTGGTAATGGAACCAAACTCCCTGAGCTTCCAACCCAAGTAGAGGAAAGTAGCAAATGTGGGAAGGAACAGAACATGGCTGTTGAAGAACACGAATCAAAGGACGAAGAAGACGCCGATGAACACGAGAACCTCCCGCCCGGTTCATACGAAATACTGCAGCTAGAAAAAGAAGAGATTCTAGCACCTCACACACATTTCTGTCCGATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCACGGTAACGAGTATAAAACCGCAGCTGCCCTGGCTAAACCGAACAAAGAGTCGAGTTCCGAGACGATGCTAATCAAGAGATATTCCTGTCCGTTCACCGGCTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACCATTCTATGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCTGTAATTGCTGATCTGAAAACACATGAGAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACAACGTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCGATTCCGCTCGACGAGTCGAAGGGAGCAGCCGTGTCGTTCGATCAAGGAGAACGCTCGGATAAGCTTAGGAGCATAAACTTCAGTTTCGGGTCGATTGCTTCAGGAGGAAGCTCTGTTGAAACCATAGTAGATGCAAAAGCTGGTGTTGATGATCCTCTTGGTTGTTTTTCACCTCTGAACTTCGAATCGTGTAATTTCGAGGGGTTTCACGAGTTTCCTCGACCGCCATTTGAGAATGTAGACAATGTGTTTTCATTCCTTAGCCCGGTATCGGGTAACTACACCCAAAAATCTGGTGCGGGATCGAGCTCTAATAGCCTTGAATGA 1512 45.04 MEPEDSLCSSEVWAKSSSFPNINIQQPSQKWVDPSILDYAMEQPFQEFEERIESKASLMCSPNQRIEILDKDSNELNAGLLASKVQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRNQALGSPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHKLSAAVPPVGQFEQLDRVLFASGPRTNSGNGTKLPELPTQVEESSKCGKEQNMAVEEHESKDEEDADEHENLPPGSYEILQLEKEEILAPHTHFCPICGKGFKRDANLRMHMRGHGNEYKTAAALAKPNKESSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAAVSFDQGERSDKLRSINFSFGSIASGGSSVETIVDAKAGVDDPLGCFSPLNFESCNFEGFHEFPRPPFENVDNVFSFLSPVSGNYTQKSGAGSSSNSLE 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6561937 6563448 + CmaCh09G011470.1 Cma09g01147 301152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01147 503 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Cma09g01147 503 MobiDBLite consensus disorder prediction 181 207 - -
Cma09g01147 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Cma09g01147 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 486 - -
Cma09g01147 503 MobiDBLite consensus disorder prediction 209 232 - -
Cma09g01147 503 Gene3D Classic Zinc Finger 237 308 - -
Cma09g01147 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 486 IPR044300 GO:0010044|GO:0010447
Cma09g01147 503 SUPERFAMILY beta-beta-alpha zinc fingers 252 277 IPR036236 -
Cma09g01147 503 SMART c2h2final6 340 362 IPR013087 -
Cma09g01147 503 SMART c2h2final6 253 275 IPR013087 -
Cma09g01147 503 SMART c2h2final6 302 335 IPR013087 -
Cma09g01147 503 MobiDBLite consensus disorder prediction 181 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01147 Cma-Chr9:6561937 Cma13g00258 Cma-Chr13:2152325 4.90E-72 dispersed
Cma07g00547 Cma-Chr7:2360128 Cma09g01147 Cma-Chr9:6561937 5.51E-80 transposed
Cma01g00917 Cma-Chr1:5565297 Cma09g01147 Cma-Chr9:6561937 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35658 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01147 - - csv:101220745 902.508