Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01168 ATGGAATCACTGAGAAAACCCACAGATTATGAGGTTAGAGCCAACAGATCCAAACCAGAAATGGCTCAAAAGACGAACTCCTCTCTCTGCTCTGTTCCAATTCTGTTTCTCCTCACTCTTCTCTTAACCCTCTCCTTCTCCCTTTTCCTCCTCTTCACTCGATCTTCCAATCCCTCATCTCTCTTCAATCCCAACATCTCTCCTTCTTCACCTGAATCCATCAAAGTCTACGTCGCAGACCTTCCCAGATCCCTCAACTACGGCCTTCTCGACCAATATTGGGCGATCCAGTCCGATTCGAGGCTCGGCAGCGACGCGGATCGTGAAATTAGATCGACCCAGATGAAGAAAACCCTCGAGTTCCCTCCGTATCCGGAGAATCCGTTGATCAAGCAATACAGTGCGGAGTATTGGATTTTGGGGGATTTGATGACGCCAGAGGCGCAGAGAGATGGATCTTTTGCTAAGAGGGTTTTTGTGGCTGAAGAAGCCGATGTGGTTTTTGTGCCGTTTTTCGCTACATTGAGTGCTGAACTGCAATTGGGAACGGCTAAGGGGGCGTTTAGGAAGAAAGTGGGGAATGAAGACTATGAGCGGCAGAGGAATGTGATGGATTTTCTTAAGAGTACTAATGCTTGGAAGAAGTCTGGTGGGAGAGACCATGTTTTTGTTCTTACTGACCCAGTGGCAATGTGGCATGTCAAAGCTGAGATAGCTCCGGCTGTTCTGCTTGTGGTTGATTTTGGCGGATGGTTCAGGCTTGATGCAAAGTCATCCAACAGTTCCTCCCAAGATATGATTCAGCACACACAAGTTTCAGTTCTTAAGGATGTGATTGTTCCATATACTCATTTACTACCTCGACTGCACTTATCAGAAAACGAGAAGCGTCGGACCTTGCTTTATTTCAAAGGGGCGAAACATCGACATCGGGGGGGATTGGTGAGGGAGAAACTCTGGGACTTGCTGATTAATGAGGCAGATGTTATAATGGAAGAAGGCTTCCCAAATGCCACAGGTAAGGAGCAATCTATCAGGGGGATGAGATCATCAGAGTTCTGCTTGCACCCAGCTGGGGATACCCCGACATCGTGCCGCCTCTTTGATGCCATCCAAAGTCTCTGTATACCCGTTGTTGTAAGCGACAACATTGAGCTTCCATATGAAGACATGGTGGATTACTCAGAATTCTGTGTCTTTGTAGCTGTTAGTGATGCATTGAAACCAAACTGGCTTGTAAAGCACCTGAGAACCATCCCCGAAGAACAGAGGAACAGATTTCGGCGATATATGGCTCAGGTTCAACCCGTTTTCGAGTACGAGAACGGGCGTCCAGGTGGTATTGGGCCAGTTGCTCCAGATGGTGCTGTAAATCACATATGGAGAAAAGTCCACCAAAAGCTGCCTATGATCAAAGAAGCCATTGCTAGGGAGAGAAGAAAACCAGAGGGTGTGGTAGTTCCTCTTCGCTGCCATTGTACCTAA 1485 47.47 MESLRKPTDYEVRANRSKPEMAQKTNSSLCSVPILFLLTLLLTLSFSLFLLFTRSSNPSSLFNPNISPSSPESIKVYVADLPRSLNYGLLDQYWAIQSDSRLGSDADREIRSTQMKKTLEFPPYPENPLIKQYSAEYWILGDLMTPEAQRDGSFAKRVFVAEEADVVFVPFFATLSAELQLGTAKGAFRKKVGNEDYERQRNVMDFLKSTNAWKKSGGRDHVFVLTDPVAMWHVKAEIAPAVLLVVDFGGWFRLDAKSSNSSSQDMIQHTQVSVLKDVIVPYTHLLPRLHLSENEKRRTLLYFKGAKHRHRGGLVREKLWDLLINEADVIMEEGFPNATGKEQSIRGMRSSEFCLHPAGDTPTSCRLFDAIQSLCIPVVVSDNIELPYEDMVDYSEFCVFVAVSDALKPNWLVKHLRTIPEEQRNRFRRYMAQVQPVFEYENGRPGGIGPVAPDGAVNHIWRKVHQKLPMIKEAIARERRKPEGVVVPLRCHCT 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6948960 6953018 - CmaCh09G011680.1 Cma09g01168 301173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01168 494 PANTHER EXOSTOSIN FAMILY PROTEIN 33 483 - -
Cma09g01168 494 Pfam Exostosin family 72 415 IPR040911 -
Cma09g01168 494 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 33 483 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01168 - - - bhj:120087310 859.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01168 Cma-Chr9:6948960 Cma13g00420 Cma-Chr13:4735362 3.38E-87 dispersed
Cma09g01168 Cma-Chr9:6948960 Cma18g00564 Cma-Chr18:3734333 2.90E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1302 . . . . . . . . . . . Cma09g01168 . . . Cpe06g00920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00784 . Sed10g1782 . Cmo09g01168 . . . Car09g01044 . . Bhi09g01618 Tan01g2956 Cmetu01g2252 . . Mch11g1579 . Cla09g00995 Cam09g1053 Cec09g1054 Cco09g1069 . . Cre09g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010824 0 1 1 3 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01168 Cma_Chr09 FPKM 11.403767 11.346212 8.576488 8.581682 10.482141 9.459626 10.9447 14.214298 14.187495 14.074499