Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01172 ATGTGCCATTATTGTGGTGCTGTGATAACAGATTCAGAGGGCAAAAGGTTGGGGAATGGTAATTCGTTTGATTTAGATGATTCTGGCACCGTGTGTATATGTAGAGTTTGCAAAGAGAACCAGGAGCTAGAAGCAATGAATCTGGATAATAAAAGTTCGAGTGAAGCGTTGATGTTAAGTCCAATGCCTTCGCTGTCGAGCTGCGATAGTGATTGTTCAACAGTGGCAAATTTAGATATCAAGGATGGTCAAGAAGGTACAACAAGAAGTAGCCAAGACAGCATCGATTGTAGGCAAGAAAGGATGTCACAGAACTGGAGCGAAGTAGTTCATAGCAACGGTCAGCTCAGTGGAAGAGATGATGAAAGTGTAATCACAATTAGCCAAGAGGCAACACACAACGGCTCTGGTGTTCGTGTCAATGCGGAAATTGAGCAATCCCATTCTAATTGGTTGGATACTGATCTGTGGGATCCTCCAGAGCCAGAGGACCCACAGGATCACGTGGAGGGTGGGATGGGTTATGATGACGACGATGACGACGAGTTTGATGACAGCACAGAATGGAACACGTCAAGTTCCTTTAGTCGCTCTGTCGATGAGGCCAGTATCAGCTATAGGATTAAAGAGCAAAAACAAAGGGCAATGCAACAGATTATGAATGGGAAGTTCAAGGTGTTCATTGGTCATCTTCTTAAATTCGTAGGCGTTGCCTCATCAGGGGAGGGTAGTGAAAATTGGGTGGATATAGTTTCTTCTTTGTCCTGGGAAGCTGCCACATTTTTGAAGCCTGTAGTAAATGGTAAAGCGGTGGATCCAGAAGCTCATGTGAAAGTAAAGTGCATTGCAACAGGAACTCGCAGCCAAAGTCAATTTGTCAAGGGTATGGTATTCAAGAAGCATGCAGCTCACAAGCACATGCCAACACATTGTAAGAACCCAAAGTTAATACTGATTGAAGGCATGCTTGGTGAGGCTCCAATAAGTAGACTGTCTTCATTTAATTCAATGGATCAGGAAAATGATTTTACGAAGCATGTTATAGAGATGATTGAAGTTTGCACCGCAAATGTGATTTTAGTTGAGAAAACTACATCACGAGTTATCCAAGAAGCAATGCTCAAGAAAGGCATGACATTAGTGCTTGATATGAAGCTCCACCGTCTGGAGAGAATAGCTCTTTGTACTGGTTCACCAATTTTGACATCTGAAACTTTAATGAGCCAAAACACCAGACAATGTGATGCTGTTTACTTCGAAAAAATTGTAGAAGAACATGCTGGTCTTTTGGAGGGAGGAAAGAGGCCAACTAAAACTTTAATGTTTATTGAGGGCTGTCCAACACGTTTGGGTTGTACGATTTTGCTGAAAGGAGCTCACAGTGATGAATTGAAGAAGATAAAGGTTGTCGTGCAGATTGCTGTTGTTATGGCATTTCACTTAATGTTAGAGACTTCTTTCCTTGTTGATCAGCGAGCTATGTTTGCAACTATTCCATTTGGTGGAGTACCAGCTACTGTTTCATCCGATCCACAATCACCTTTAGAGCCTTGTAGCCCAAATGCACAAGGGGCTTCTAACGGATCAAACCTGGAGGGGGAACCATATAATGCTGCCATATTTTCTGGACTCTCATCCATTTCTGATTCATTAAAGAGAGTCATGGGAGAAAGTTTTTTCTTAGCTTCTCCCTGTCAGTCGTTTTCTTCTTATTTTGGACATGGAAAAGACCTGAGTGGCTTGGTTGCCAAGTCTGACTCAATTCCCTCTACTCCACCGGAAGCTGATCAATTTGATGTGGAAGTTAGGGGTAGTTCTGATGAAGAGAATTCAATTCATGAACAGTTTGTGCCCCATCAATCAACCTTTGATGAAGGGTTTGGATTCCATGAAACTGCTCCAAACTATTCTGAAGACAAACTGCCGAAGAAGACGCCATTCAATTCTCAGAGTATTTTGGTTTTGATGTCGAGCCGAAATGCTTTGAAGGGAACCATGTGTGAGCAAAGTCATTTTTCACATATTGTGTTCTACAAGAATTTTGATGCTCCTCTCGGGAAATTTTTACAAGAAAATTTACTAAATCAGAAGAACGTCTGCACTGTATGTGGTGAACTGCCGGAAGCTCACTATTACTATTACGCACATTCTCGAAAGCAGCTTTGCATTCAAGTCAAACAGCTTCCAGTCGATAAAGTTTTGCCAGGTGAAACAGAAGGAAAACTTTGGATGTGGAGTCGTTGCAGTAAATGTAAATCTAAGGGAGGACCTTCAAAGTCCACAAAAAGGGTGCTGATCTCCACGGCAGCACGTGGCTTGTCATTCGGAAAGTTTTTGGAGCTTTGTTTCTCTGATTGTACTTTACCTAGTAAATCATCAGTTTGTGGTCATTCATTGTTCGGGGACTTCCTCTACTTCTTCGGACTGGGCAATATGGTTGCTATGTTCAGATATACGGAGGTAGCAATATATACTGTCTCTATGCCTCCTCAGAAACTGGAGTTCAACAATTCAATGAGACAAGGTCATCTCATCACAGAAACTGAAAATGTTTATGAGAAAGGGATGATACTTTTCACTGAGATTGCGCAGTTTCTGAAGAAGATCATATCCGAACGTAAAAGTTCAACTGTAAACGACTTTTCTTTGTTAGAAGAAATGTTGAACGAAGAAAGATCAGAATTTGAGCTAAATATTCAAAGTTCTCTTACTAAGAAAGGAAACCCGGACTTCCCTTTTCACAAATATCTCAGTCTGAATCGATTGCTCTGGGAGCTGCTACTAGAATCATGTATTTGGGATAAACGCTTGCAATTATTAACATCACTGGGCGTTACAATAAACTCTGGCACCTCTGAAAATGTTGAGCCTGAACCAGTCAGACATGAGGGATTAGAATCAATTGCACAAACTGATGATAGAAACGTTCAGCAAGATGTATCAGTCGATGAAAATGCATTACATTCGAAGGAAATTGCAGTCGAACATTTGGATGGAGAGTCTGATGGTGATGAACTTGGTTTACCTTCGGCGACTGAAGTCACAGAGATACCAATTATGGATGATCTGAGCCCCAAACAACTTTCTCGCCAAGGATCGTTGTTAAATGGCTTCAACCGTCGCCATTCGGATGATGAGGATCCTCAAGCAGGAAGGGTTCTGTCATCTGGTGATATTCCAAGTTCAACTGGTAATTTGACCTCGGACAAATTGTTCTGGACACCATTTTCGGAGATCCAGCAAATGCGCATGAGGGACATCCAGAGAAGTTATTTTCCCGAACTCAAATCCATCAGTAACTATACTCCAAAACTCTTACCCACAGCCCATGAATTCATCAACAAAGAAGGACAGAAGCTACACATTTTTCTTTCAAATGAGAAGTTTATTGTTTCAGATTACGAGGGCGAACTCTCGAGCATAGTTGCTTGTGTACTTGCTTTGTTGAAGGATCTATCCCTTGAAACAGATCTTCATAATGAGGATAGTAAGGGAGAGGGTCTAAATAAAGTTCCCTCCAGTGGATCCTCAGATTCTGATTCGAGCGTCACTTCAGAAGAACATCAGTTCTCAAGTTTTGACAGGTTAAATTTGTTGGATTCTCTTCTCCCAAAGACTTTCAAGCGAGCCGAACATGAAGGGGTCATAAAGTCACTAGCAAAGGGAAAATATCTTGTGAATTGTCCATATTTCAATCAGTTCCGTGATCTTCGTAGACGATGCTGCCCATCTGAGCTCCATTACATAGCTTCCCTAAGCCGTTGTATAAACTGGAATGCAAAAGGCGGGAAGAGCAAATCTTTCTTCGCCAAGACACTTGATGACAGGTTCATTATTAAAGAAATTAAAAGGACCGAATATGAGTCATTTATGAAGTTCGCTCCCGATTATTTCAAGTACATTAATGAATCATTTGACATGGGGAACCAGACCTGCCTCGCTAAAGTTCTTGGAATCTATCAGGTAACAGTGAGAGAGCCCAAGAGTGGAAAAGAGGTGAGGCATGAATTGATGGTCATGGAGAATCTCAGTTTCGGTCGCAACATAATTCGCCAATATGATCTTAAAGGAGCTCTACATGCTCGATACAATCCAGCTACTAACGATTTTGGTGAAGTCCTCTTAGATCAGAACTTTGTGAATGACATGAACTCATCTCCCCTCTATGTTAATAATCAAGCAAAGCGTCGGTTGCAACGGGCAATTTGGAATGATACTGCTTTTCTCAATTCTATGAATGTTATGGATTATTCTCTGCTTGTCGGGGTCGATGCCAAGAAGAAGGAACTTGTATGTGGGATTATCGATTACCTTAGACAATACACGTGGGATAAGCAACTAGAGACATGGGCGAAATCCTCCCTGAGACCGAAAAATGTTCTGCCCACAGTTGTCTCTCCGAAGGAGTACAAGAGGAGATTTAGAAAGTTCATGTCTGCACACTTCTTGAGTGTCCCAGATAATTGGTGCCAGCAGCAGAATCTCCATGGGCCATGGGGAGCCTGTGGTGGCACCATAGATCATGCTTCTTCCCAGACGAACGCCGAAGAAAATGATCTCTCTTCTTGA 4569 41.96 MCHYCGAVITDSEGKRLGNGNSFDLDDSGTVCICRVCKENQELEAMNLDNKSSSEALMLSPMPSLSSCDSDCSTVANLDIKDGQEGTTRSSQDSIDCRQERMSQNWSEVVHSNGQLSGRDDESVITISQEATHNGSGVRVNAEIEQSHSNWLDTDLWDPPEPEDPQDHVEGGMGYDDDDDDEFDDSTEWNTSSSFSRSVDEASISYRIKEQKQRAMQQIMNGKFKVFIGHLLKFVGVASSGEGSENWVDIVSSLSWEAATFLKPVVNGKAVDPEAHVKVKCIATGTRSQSQFVKGMVFKKHAAHKHMPTHCKNPKLILIEGMLGEAPISRLSSFNSMDQENDFTKHVIEMIEVCTANVILVEKTTSRVIQEAMLKKGMTLVLDMKLHRLERIALCTGSPILTSETLMSQNTRQCDAVYFEKIVEEHAGLLEGGKRPTKTLMFIEGCPTRLGCTILLKGAHSDELKKIKVVVQIAVVMAFHLMLETSFLVDQRAMFATIPFGGVPATVSSDPQSPLEPCSPNAQGASNGSNLEGEPYNAAIFSGLSSISDSLKRVMGESFFLASPCQSFSSYFGHGKDLSGLVAKSDSIPSTPPEADQFDVEVRGSSDEENSIHEQFVPHQSTFDEGFGFHETAPNYSEDKLPKKTPFNSQSILVLMSSRNALKGTMCEQSHFSHIVFYKNFDAPLGKFLQENLLNQKNVCTVCGELPEAHYYYYAHSRKQLCIQVKQLPVDKVLPGETEGKLWMWSRCSKCKSKGGPSKSTKRVLISTAARGLSFGKFLELCFSDCTLPSKSSVCGHSLFGDFLYFFGLGNMVAMFRYTEVAIYTVSMPPQKLEFNNSMRQGHLITETENVYEKGMILFTEIAQFLKKIISERKSSTVNDFSLLEEMLNEERSEFELNIQSSLTKKGNPDFPFHKYLSLNRLLWELLLESCIWDKRLQLLTSLGVTINSGTSENVEPEPVRHEGLESIAQTDDRNVQQDVSVDENALHSKEIAVEHLDGESDGDELGLPSATEVTEIPIMDDLSPKQLSRQGSLLNGFNRRHSDDEDPQAGRVLSSGDIPSSTGNLTSDKLFWTPFSEIQQMRMRDIQRSYFPELKSISNYTPKLLPTAHEFINKEGQKLHIFLSNEKFIVSDYEGELSSIVACVLALLKDLSLETDLHNEDSKGEGLNKVPSSGSSDSDSSVTSEEHQFSSFDRLNLLDSLLPKTFKRAEHEGVIKSLAKGKYLVNCPYFNQFRDLRRRCCPSELHYIASLSRCINWNAKGGKSKSFFAKTLDDRFIIKEIKRTEYESFMKFAPDYFKYINESFDMGNQTCLAKVLGIYQVTVREPKSGKEVRHELMVMENLSFGRNIIRQYDLKGALHARYNPATNDFGEVLLDQNFVNDMNSSPLYVNNQAKRRLQRAIWNDTAFLNSMNVMDYSLLVGVDAKKKELVCGIIDYLRQYTWDKQLETWAKSSLRPKNVLPTVVSPKEYKRRFRKFMSAHFLSVPDNWCQQQNLHGPWGACGGTIDHASSQTNAEENDLSS 1522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6967695 6975402 - CmaCh09G011720.1 Cma09g01172 301177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01172 1522 CDD PIPKc_PIKfyve 1230 1482 IPR044769 GO:0000285
Cma09g01172 1522 MobiDBLite consensus disorder prediction 173 187 - -
Cma09g01172 1522 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1167 1342 IPR027484 -
Cma09g01172 1522 MobiDBLite consensus disorder prediction 1167 1184 - -
Cma09g01172 1522 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1260 1428 IPR002498 GO:0016307|GO:0046488
Cma09g01172 1522 SMART PIPK_2 1203 1483 IPR002498 GO:0016307|GO:0046488
Cma09g01172 1522 Pfam TCP-1/cpn60 chaperonin family 201 480 IPR002423 GO:0005524
Cma09g01172 1522 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 146 1501 - -
Cma09g01172 1522 MobiDBLite consensus disorder prediction 1159 1184 - -
Cma09g01172 1522 MobiDBLite consensus disorder prediction 508 529 - -
Cma09g01172 1522 SUPERFAMILY GroEL apical domain-like 289 458 IPR027409 -
Cma09g01172 1522 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1164 1482 IPR002498 GO:0016307|GO:0046488
Cma09g01172 1522 MobiDBLite consensus disorder prediction 152 194 - -
Cma09g01172 1522 Gene3D GroEL 288 458 IPR027409 -
Cma09g01172 1522 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 146 1501 - -
Cma09g01172 1522 Gene3D - 1344 1483 - -
Cma09g01172 1522 MobiDBLite consensus disorder prediction 1036 1062 - -
Cma09g01172 1522 SUPERFAMILY SAICAR synthase-like 1218 1482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01172 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - csv:101202759 2365.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01172 Cma-Chr9:6967695 Cma17g00650 Cma-Chr17:5488026 7.31E-65 dispersed
Cma01g00943 Cma-Chr1:5976035 Cma09g01172 Cma-Chr9:6967695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01172 Cma_Chr09 FPKM 14.588846 15.669568 14.09321 13.550969 7.998128 8.575786 8.925052 25.044876 21.993488 23.096704