Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01174 ATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGCGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCGCCGTCGCGGTCTCGAATCTTTCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTGGACTTCTATGCAACCTGGTGTGGTCCTTGTCAGTTCATGGTTCCAATTCTTGAAAAAGTTAGTGATGCGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATTGCTGATAAATACAAAATAGAGGCATTACCTACGTTTATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCGGGTGAACTCATTCAACGCATTGAAAATTCCCTGAAGGTTAAGCAATAA 525 45.9 MAASISTSPYPLLTSERSNRFAANDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAPSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSDALSDTVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELIQRIENSLKVKQ 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7234676 7238957 + CmaCh09G011740.1 Cma09g01174 301179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01174 174 ProSitePatterns Thioredoxin family active site. 87 105 IPR017937 -
Cma09g01174 174 CDD TRX_family 73 167 - -
Cma09g01174 174 Pfam Thioredoxin 70 167 IPR013766 -
Cma09g01174 174 PRINTS Thioredoxin family signature 86 94 - -
Cma09g01174 174 PRINTS Thioredoxin family signature 94 103 - -
Cma09g01174 174 PRINTS Thioredoxin family signature 134 145 - -
Cma09g01174 174 ProSiteProfiles Thioredoxin domain profile. 49 171 IPR013766 -
Cma09g01174 174 SUPERFAMILY Thioredoxin-like 71 171 IPR036249 -
Cma09g01174 174 PANTHER THIOREDOXIN Y1, CHLOROPLASTIC 18 173 - -
Cma09g01174 174 PANTHER GEO12009P1 18 173 - -
Cma09g01174 174 TIGRFAM thioredoxin: thioredoxin 72 168 IPR005746 GO:0015035
Cma09g01174 174 Gene3D Glutaredoxin 68 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01174 - - - mcha:111020017 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01174 Cma-Chr9:7234676 Cma16g00782 Cma-Chr16:4299753 2.38E-20 dispersed
Cma01g00906 Cma-Chr1:5417971 Cma09g01174 Cma-Chr9:7234676 3.91E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01174 Cma_Chr09 FPKM 4.329032 4.991878 14.118697 11.878547 34.138508 35.382481 34.27602 10.248392 10.331838 11.332641