Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01177 ATGGAGATGGAATTGAGAGCAATGGAAGACATAGAAATGGCGGAAGACATTACTCCGCCGTTGCCTCCTCTCACCGCCGCTCTCCACGATTCCTTCCTCCTCACTCACTGCTCCTCCTGTTTCTCCCCTCTTCCAAATTCCCCAATTTCCCACTCTAATCTCCTCCGCTACTGCTCCCCTATATGCTCCTATTCCGATTCCCTCACCGCCGCCGTCTTCTCCACCGATCATTTTCTCTTCTCCGACACCTCCGACCTCCGCGCCTCCCTCCGCCTCCTCCACCTCCTCCTCTCCGATACCTCCGCTTGGCGCTCTACTCCTCCCGAGCGTATCTTTGGCCTTCTCACCAATCGGGAGAAATTGATGCTTGCTGATGACGATTCCGAGGTTTTCGCCAAGATTCGGAAAGGTGCCGACGCCATTGCCACCTCCAGACGGACGAACTCCGCCGATATTCGCTATGACAACGCCTTGGAAGAGGCCATCATGTGCCTCGTATTGACCAACGCCGTCGAGGTTCAGGATTCGGTTGGCCAAACCATTGGGATTGCTGTGTACCATCCAACCTTCTGCTGGATCAATCACAGTTGTTCTCCCAATGCTTGTTACAGATTTGAAACTCCGTCGGATTCCATCAAGACGAGGCTACGGATTTCCCCCTTCTGTACTGACATTGGGACTGGTGAAGGAAGTTGCAGTCAAATGAGTACTGTTCGTAGAAACTTTTCGCATTTCATTACAAAAGATTTTCAGGGTTATGGTCCAAGAGTCATGGTTAGAAGTATAAAGAGTATAAGGAAAGGCGAAGCAGTCACGATTGCATACTGTGACTTGTTGCAACCTAAGGCAATGAGGCAGTCAGAGTTGCGATCAAGATATAAATTTGTCTGTAGTTGCCAGCGATGTAGTGCCAAGCCCCCAACTTATGTGGACCATGCTTTGCAAGAAATCTTTGCTGTCAATGTGGAGGAATTGCTTGATTCAACTTCCATTAGCAACTTTGATTATGACACTGCAATAACAAGAATAGATGATTATGTCAACAATGCCATAGCTGAGTACCTGTCTATTGGTTCCCCTGAATCATGTTGCGAGAAGCTTCAAAACTTGCTTACTTTAGGTTTCTACGACGAGCAAGCGGACGACGGGGATGGAAAACAGCTTCTTAACTTGAGGCTGCATCCCGTGCACTTCCTGTTGCTGAACGTGTACACTGCTCTAGCATCGGCTTACAAAGTTCGTTCATGGAATGACAATGAAAATCAATGCAACACATCTACGATGAGCAAAACAAGTGCAGCATACTCCTTGTTCCTTGCAGGTGCTACTCATCATCTTTTTCTTAATGAACCATCTTTGATTGCTTCTGCTGCAAATTGTTGGGTTGTTGCTGGAGAGTCTTTGCTCAGGCTTGTTAGACACAGCTCATTATGGGGTTCCAACACTTCAAAATCGAGCTCCCCTATGGGCGAAATAACATGTTTAAACTGCTCATGGGTCGATAAGTTCAATACGAGTAGAATCCATGGTCGATCTATAGAAGTGGATTTTCAGGAGTTTTCGATTGGTATTTCTAATTGCATTGCTAATATTTCACACAAATATTGGAGCTTTCTAACTCATGAATGCCCATATTTGAAGGCTTTCACTGACCCCTTTGATTTCAGCTGGCCGAAGACGATCACGACATGTTCGAATTACCGTGATCGTTTGTGTGATTATAGTAAAATTCAAGATGTTTCTGACCAAGACAGGCAATCTATCTTTGAGCTTGGTATCCATTGCTTATTCTATGGAGGTTATTTAGCAAGTATTTGTTATGGTCACCCTTCACATTTGTCATCCCAGATTCAATGTATTTTACAGGACATGAACTGA 1878 45.63 MEMELRAMEDIEMAEDITPPLPPLTAALHDSFLLTHCSSCFSPLPNSPISHSNLLRYCSPICSYSDSLTAAVFSTDHFLFSDTSDLRASLRLLHLLLSDTSAWRSTPPERIFGLLTNREKLMLADDDSEVFAKIRKGADAIATSRRTNSADIRYDNALEEAIMCLVLTNAVEVQDSVGQTIGIAVYHPTFCWINHSCSPNACYRFETPSDSIKTRLRISPFCTDIGTGEGSCSQMSTVRRNFSHFITKDFQGYGPRVMVRSIKSIRKGEAVTIAYCDLLQPKAMRQSELRSRYKFVCSCQRCSAKPPTYVDHALQEIFAVNVEELLDSTSISNFDYDTAITRIDDYVNNAIAEYLSIGSPESCCEKLQNLLTLGFYDEQADDGDGKQLLNLRLHPVHFLLLNVYTALASAYKVRSWNDNENQCNTSTMSKTSAAYSLFLAGATHHLFLNEPSLIASAANCWVVAGESLLRLVRHSSLWGSNTSKSSSPMGEITCLNCSWVDKFNTSRIHGRSIEVDFQEFSIGISNCIANISHKYWSFLTHECPYLKAFTDPFDFSWPKTITTCSNYRDRLCDYSKIQDVSDQDRQSIFELGIHCLFYGGYLASICYGHPSHLSSQIQCILQDMN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7284035 7297701 + CmaCh09G011770.1 Cma09g01177 301182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01177 625 Gene3D Tetratricopeptide repeat domain 277 435 IPR011990 GO:0005515
Cma09g01177 625 Pfam SET domain 166 275 IPR001214 GO:0005515
Cma09g01177 625 Gene3D SET domain 136 275 IPR046341 -
Cma09g01177 625 SUPERFAMILY SET domain 182 300 IPR046341 -
Cma09g01177 625 PANTHER PROTEIN SET DOMAIN GROUP 41 3 623 - -
Cma09g01177 625 CDD SET_SMYD 158 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01177 - - - bhj:120076605 883.248
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1362 . . . Bda03g00397 . Bpe04g00358 Bma04g00375 . . . . Cma09g01177 . . . . . Bhi04g02202 . . . . . . . . . . . . . Cone4ag1490 . . . . . . . . . . . . . . . . . . . . . Car09g01052 . . . . . . . . . . . . . . . . . . Chy03g00252 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005914 1 1 0 2 1 2 1 3 2 1 2 2 1 1 1 1 2 1 0 3 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35659 PF00856 SET 2.20E-05 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01177 Cma_Chr09 FPKM 3.081349 2.428829 4.316427 4.690189 3.041285 2.861187 2.970397 4.376521 4.629767 5.648634