Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01181 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTTATCAATGCTGATGAGGTTGCAAGAGTGACTTATGTGAAGGAGTTGAGTGGGCAAATTTGCCAGATCTGTGGAGATGAGCTAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCGTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGTGTTGAAGGTGATGAAGAAGAAGACGATATCGATGATCTTGAGAATGAATTTGACATTGCAAACAAGGATCCTAATGGTGCATCTGATGCAATGCTCTATCCTCACCTTGCTGTTGGGCGTGGTTCTCATACTAATGGTTCTGGAAATATGGCTTCCGACCTCAACTCCTCGTCCGTCCCCACCGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATCATTCCTCCATTTATTAGCCGTGGGAAAAAAGTCCATCCAGCACCATTCACTGATTCCATGTCTGCTAATCCAAGGCCGATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACGGTTGCGTGGAAAGAAAGAATGGAGGAATGGCGGAAGAAACAAAATGAAAGGCTTCAAGTAATTAAGCACGAGGGTGGAGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCGATCTCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTCTCCTTCATCCTGTCAACGAAGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCGATTGTTCGAGAAACTTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTATGTCAGTACTGTGGATCCATTGAAGGAGCCTCCTCTCATCACGGCAAACACCGTCCTGTCTATTCTTGCCGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCGGACGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCCGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATCGAACCTCGGGCCCCAGAATGGTATTTTGCCCTGAAGGTCGATTATTTGAAAGATAAAGTTGATCCAACCTTCATCCGGGAAAGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTCGTTGCCATGGCTCAAAAAGTTCCTGAAGACGGGTGGACAATGCAGGACGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTTCAAACGGGGTTCGTGATTTGGAGGGAAATGAATTACCTCGTTTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTCGATCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTATCGGCAATCATTTCAAACGCTCCATACATTTTGAACGTTGATTGTGATCACTACATCAACAACAGCAAGGCGCTTAGAGAAGCAATGTGCTTCATGATGGACCCGATTTCGGGAAAAAGAATATGCTATGTACAGTTTCCACAAAGATTTGACGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTGTTTTTTGATATCAACATGAAAGGATTGGACGGTATTCAAGGACCGATTTATGTCGGAACGGGATGTGTCTTCAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAATTGTCTTCCAAAATGGTGCTGCTGCTGCTGTGGAACTAGAACGAAGACGAAAACAAAGACCAGTGATAAAAAGAAGTTAAAAACCAAAGATACGTCGAAACAGATTCACGCGCTCGAAAATATCGAGGAAGGAATCGAAGGAATAGATAATGAGAAATCGTCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTCGGGCAATCGCCAGCCTTCATTGCTTCGACACTTATGGAAGACGGTGGCGTGCCCGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCATGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTCGGGTGGATATATGGGTCCGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTACTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCGGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGATGGGCTCTCGGGTCTGTTGAAATTCTGTTGAGTAGGCACTGTCCAATATGGTACGGCTATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCTGTTGTTTATCCATTGACGTCAGTTCCACTGATTGCATATTGTACGCTACCAGCTGTCTGCCTGCTTACAGGGCAGTTCATTGTCCCGGAGCTAAGCAATTATGCCAGTATCATCTTCATGGCCCTTTTCATCTCTATAGCAGCAACCGGTATCCTTGAAATGCAGTGGGGAGGTGTCGGGATCCACGATTGGTGGAGAAACGAGCAATTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACGGTCACATCGAAAGGAGGAGACGATGGCGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTATTAGTCCCTCCATTGACGTTACTGATCATAAACATTATCGGAGTTGTCGTCGGAATTTCAGACGCCATCAACAACGGTTACGACTCATGGGGGCCACTCATCGGTAAGCTATTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTATGGTCAATTCTTCTATCGTCGATTCTATCGCTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTCTTGGAAGTTTGCGGGTTAAACTGTGACTAA 3267 45.42 MDTKGRLIAGSHNRNEFVLINADEVARVTYVKELSGQICQICGDELEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNGASDAMLYPHLAVGRGSHTNGSGNMASDLNSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRLLHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKDKVDPTFIRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGSNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRTKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCD 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7489487 7496140 + CmaCh09G011810.1 Cma09g01181 301186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01181 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cma09g01181 1088 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 511 654 IPR029044 -
Cma09g01181 1088 PANTHER CELLULOSE SYNTHASE 1 1087 - -
Cma09g01181 1088 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma09g01181 1088 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cma09g01181 1088 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cma09g01181 1088 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 871 IPR029044 -
Cma09g01181 1088 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Cma09g01181 1088 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1087 - -
Cma09g01181 1088 SUPERFAMILY RING/U-box 29 107 - -
Cma09g01181 1088 Coils Coil 99 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01067 Cma-Chr3:7347798 Cma09g01181 Cma-Chr9:7489487 0 dispersed
Cma07g00778 Cma-Chr7:3510991 Cma09g01181 Cma-Chr9:7489487 0 dispersed
Cma09g01181 Cma-Chr9:7489487 Cma10g00457 Cma-Chr10:2078387 0 dispersed
Cma01g00902 Cma-Chr1:5351284 Cma09g01181 Cma-Chr9:7489487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01181 K10999 - csv:101214061 2100.09