Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01190 ATGGAGCACTACAAGGTTTTGGCTCTGGGTTTCGTTTCTTTGATATTGCTGCTTCGTTCACTATGGCTTGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAATCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCCTGTACATGGTTTCATGTTACTTGCAACAATGATAATAGTGTCATACGAGTTGATCTTGGAAACGCAGCTTTATCGGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAACAACATAAGTGGAGTAATTCCAAGTGATCTGGGAAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTCTCGGGTCCAATTCCCGACACGTTAGGCAAGCTGTCAAAACTACGATTCCTCCGGCTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATCTCATCCCTTCAAGTGTTGGATCTATCGAATAACCATCTCTCGGGCGTGGTTCCAGATAACGGTTCCTTCTCCTTGTTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTAACTGGACGTCCTTGCCCTGGATCGCCTCCGTTTTCTCCTCCTCCACCCTTTGTCCCGCCACCTCCTATATCTTCACCAGGAGGAAACAGTGCAACCGGAGCGATTGCTGGTGGCGTTGCTGCAGGTGCTGCATTACTTTTTGCAGCTCCAGCAATCGCATTTGCGTGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTCGACGTTCCTGCCGAAGAGGATCCGGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAGCTACAAGTAGCTACTGATAGTTTTAGTAACAAGAACATACTTGGTCGGGGTGGATTTGGTAAGGTCTACAAAGGTCGATTGGCAGACGGTTCTTTAGTCGCCGTAAAAAGACTCAAGGAAGAACGTACGCCTGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTACATCGGAACCTGCTACGTCTACGTGGATTTTGCATGACGCCAACCGAACGACTTCTTGTTTATCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATAGCATTGGGATCAGCAAGAGGGTTGTCTTATTTACACGATCACTGTGATCCAAAGATCATTCACCGTGATGTAAAAGCTGCAAATATTTTGCTAGATGAGGAGTTCGAAGCTGTCGTAGGTGACTTCGGGCTGGCCAAACTCATGGATTACAAAGATACTCATGTCACCACCGCGGTACGTGGTACAATTGGACATATAGCTCCTGAGTATCTTTCCACTGGTAAGTCCTCTGAGAAAACAGACGTTTTCGGGTACGGTATCATGCTTCTAGAGCTTATAACTGGTCAAAGAGCTTTTGATTTGGCTCGACTCGCCAATGACGATGATGTCATGCTACTCGATTGGGTGAAAGGACTTCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGACCTTCAGAATAACTATGTCGAATCCGAGGTCGAACAGTTGATTCAAGTAGCGCTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCGGAGGTGGTTCGAATGCTGGAAGGAGACGGGTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATTCTTCGACAAGAAATCGACCTATCGCCCCATCCGAATTCCGATTGGATTGTGGATTCGACTGAAAATCTACATGCAGTGGAGCTTTCTGGTCCGAGATGA 1878 46.81 MEHYKVLALGFVSLILLLRSLWLVSANMEGDALHSLRISLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7646946 7653193 + CmaCh09G011900.1 Cma09g01190 301195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01190 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cma09g01190 625 SUPERFAMILY L domain-like 31 193 - -
Cma09g01190 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01190 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cma09g01190 625 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01190 625 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 11 625 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cma09g01190 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Cma09g01190 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cma09g01190 625 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cma09g01190 625 Pfam Protein kinase domain 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01190 625 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515
Cma09g01190 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cma09g01190 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 625 - -
Cma09g01190 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00386 Cma-Chr4:1947244 Cma09g01190 Cma-Chr9:7646946 0 dispersed
Cma04g00817 Cma-Chr4:4181746 Cma09g01190 Cma-Chr9:7646946 0 dispersed
Cma09g01190 Cma-Chr9:7646946 Cma16g00247 Cma-Chr16:1147203 0 dispersed
Cma09g01190 Cma-Chr9:7646946 Cma04g00792 Cma-Chr4:4036169 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68814 PF00069 Pkinase 9.50E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01190 K13418 - csv:101208695 1120.53