Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01201 ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAA 489 42.13 MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7827621 7830072 + CmaCh09G012010.1 Cma09g01201 301206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01201 162 SUPERFAMILY RING/U-box 77 146 - -
Cma09g01201 162 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Cma09g01201 162 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 11 142 - -
Cma09g01201 162 SMART ring_2 93 134 IPR001841 -
Cma09g01201 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Cma09g01201 162 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 142 - -
Cma09g01201 162 Pfam Ring finger domain 93 135 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00920 Cma-Chr2:5482126 Cma09g01201 Cma-Chr9:7827621 7.00E-23 dispersed
Cma09g01201 Cma-Chr9:7827621 Cma15g01289 Cma-Chr15:8181182 5.37E-31 dispersed
Cma20g00691 Cma-Chr20:3165800 Cma09g01201 Cma-Chr9:7827621 2.83E-12 dispersed
Cma01g00880 Cma-Chr1:4977130 Cma09g01201 Cma-Chr9:7827621 9.62E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01201 K19039 - csv:101219324 241.891