Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01207 ATGTCTGGCAGTGGTGGAAGTGCGATCTTGAAATGGAAGAAGTTGCAGGCAATAAGGCTGCTCTGTTTCTCAAATCACAATTACCGCACGACCCAGATTTGCCCCATTTCGACCCATCTCAATTATCTTCATGTTTCGAGTTATCGCCGGCGGGAATCGTTTATCGGCGTTCAGGAGCGGTACAAATGGGACAACGGCGGGTCTGGTTCCGATGATTTCAATTCACAGTCGAATAACACAGGTACTCCAATCCGTAAGATTCGGGCTGAGGCCAATTGTCCACGTTGTTCCAAGCATATGGATATCATCTTCTCTAGCCGCCATTTCCCAACCCTTAATCCTCCTTCTGGTGATGCTCCTCCCAAGGCTGCTGGAGGAAGAGAAGCCTACGAGGCTGTTAATTTGTGCCCCAGTTGCAAATCCGCTTACTATTTCCGCCCTTACAAGATCGCTCCTCTACAGGGCAGCTTCATTGAGATCGGTAATCTGAATTCCAAACCGAAGACCGCAGTAAAAAGGATCACTAGCAAAGATGGTAAAGGTAATGCCATGATCGGTACTTCAGATGAAAATTATGCGAGTGGTAGGCTGAGAGTCTCGTTATTCGAAACTATGAGATCGTCTGGTGGAGAACCGCCTGAAAATTGGCCTCCTGGACCTCCCCCCGTCAATGGGTTGGCGGTGCATTCTCCTCCGGGACCGCCGTTTGTTCCTGGTGTGAACTTCGTTCGGGCTACAGGTCCCGGTGGAAACACCTCCGGTTCTGGTGGAAATGGCGCTGGTGATGGTAAGAAGAGTGAGTGGGGTGGATCGAATTTGGGGAAGGATCTACCAACTCCAAAAGAGATTTGCAAGGGTTTGGACAAATTTGTTATTGGCCAAGAAAAAGCCAAGAAGATACTCTCTGTGGCTGTACATAACCATTACAAACGAATATATCATGCTTCCTTGCAAAAAGGGTCGGGAACTGAATCAGGTACCCAAGATCGGATAGATGATGATGATAACGTAGAGTTAGAAAAGAGCAATGTTCTTTTGATGGGCCCAACAGGCTCTGGGAAGACACTCCTTGCAAAGACTTTGGCTCGATTTGTGAATGTGCCATTTGTCATTGCTGATGCTACAACTTTAACACAGGCTGGTTATGTTGGAGAAGACGTCGAATCGATTTTGTACAAGCTACTTGCTGCAGCAGAATTTAATGTACAAGCAGCTCAACAAGGGATGATTTACATTGATGAAGTTGACAAGATAACAAAGAAGGCTGAGAGTCTAAATATTAGCAGAGATGTTTCTGGTGAAGGCGTTCAACAGGCATTATTGAAGATGCTAGAAGGAACTATAGTAAATGTTCCTGAGAAGGGGACGAGAAAACATCCTCGCGGTGATAACGTTCAGATAGATACAAAAGATATTTTGTTCATATGTGGTGGAGCGTTCATAGATCTTGAAAAGACAATCTCTGATAGACGGCAAGATTCTTCTATCGGTTTTGGCGCGCCTGTTCGTGCTAACATGAGAATGGGAGGGGTTACGAGTGCTGCTGTTACATCTTCGTTGCTGGAAACGGTTGAGAGTTCTGATCTTATAGCATATGGTCTCATACCAGAGTTTATAGGGCGTTTTCCAATTCTTGTTAGCTTATCAGCCTTGACTGAAGAACAGCTTGTCCAGGTCCTCACTGAACCGAAAAACGCCCTCGGTAAGCAGTACAAGAAGTTGTTTGGCATGAATAACGTGAAGCTGCATTACACAGAGAAAGCACTGAGACTGATTGCCCAGAAATCAATGGCCAAGAACACTGGTGCCAGAGGCTTGAGAGCCATACTGGAAACCGTTCTTGCAGAAGCCATGTATGAGATCCCCGATGTCAAGACTGGAAACGAAAGCGTAGACGCCGTTGTCGTTGACGAAGAATCCGTTGGCTCACTAAATTCAAGAGGCTGCGGAGGCAAAATTCTTCGTGGCGATGGAGCGTTGGAGCGGTATCTAGCGGAAACCAAGTCGAAAGAATCAGAGGATAATATGGAGGAAGGCGAGGCAGAGATGTCATCAAGAGCTGTGAGTCTATAG 2073 46.41 MSGSGGSAILKWKKLQAIRLLCFSNHNYRTTQICPISTHLNYLHVSSYRRRESFIGVQERYKWDNGGSGSDDFNSQSNNTGTPIRKIRAEANCPRCSKHMDIIFSSRHFPTLNPPSGDAPPKAAGGREAYEAVNLCPSCKSAYYFRPYKIAPLQGSFIEIGNLNSKPKTAVKRITSKDGKGNAMIGTSDENYASGRLRVSLFETMRSSGGEPPENWPPGPPPVNGLAVHSPPGPPFVPGVNFVRATGPGGNTSGSGGNGAGDGKKSEWGGSNLGKDLPTPKEICKGLDKFVIGQEKAKKILSVAVHNHYKRIYHASLQKGSGTESGTQDRIDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGMIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGTRKHPRGDNVQIDTKDILFICGGAFIDLEKTISDRRQDSSIGFGAPVRANMRMGGVTSAAVTSSLLETVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLVQVLTEPKNALGKQYKKLFGMNNVKLHYTEKALRLIAQKSMAKNTGARGLRAILETVLAEAMYEIPDVKTGNESVDAVVVDEESVGSLNSRGCGGKILRGDGALERYLAETKSKESEDNMEEGEAEMSSRAVSL 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7957753 7971445 + CmaCh09G012070.1 Cma09g01207 301212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01207 690 Pfam AAA domain (Cdc48 subfamily) 340 544 IPR003959 GO:0005524|GO:0016887
Cma09g01207 690 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 272 641 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cma09g01207 690 Gene3D - 550 649 - -
Cma09g01207 690 CDD AAA 341 458 - -
Cma09g01207 690 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 45 689 - -
Cma09g01207 690 MobiDBLite consensus disorder prediction 667 690 - -
Cma09g01207 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 636 IPR027417 -
Cma09g01207 690 SMART AAA_5 340 498 IPR003593 -
Cma09g01207 690 SMART ClpB_D2_small_2 551 644 IPR019489 -
Cma09g01207 690 MobiDBLite consensus disorder prediction 667 681 - -
Cma09g01207 690 Pfam C-terminal, D2-small domain, of ClpB protein 551 621 IPR019489 -
Cma09g01207 690 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 45 689 - -
Cma09g01207 690 MobiDBLite consensus disorder prediction 245 279 - -
Cma09g01207 690 Gene3D - 271 549 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01207 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101217900 1194.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00888 Cma09g01207 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01207 Cma-Chr9:7957753 Cma18g01332 Cma-Chr18:10151205 0 dispersed
Cma04g01896 Cma-Chr4:9892183 Cma09g01207 Cma-Chr9:7957753 6.38E-21 transposed
Cma01g00888 Cma-Chr1:5111973 Cma09g01207 Cma-Chr9:7957753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01207 Cma_Chr09 FPKM 11.566026 13.671394 13.9894 13.040624 19.109587 17.911402 19.922325 14.441537 15.072678 15.048364