Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g01213 | ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAATATTTGAAGAAAACAATAAATAGTGAAGCTGCAACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGGAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAAAGAACTTCAAGTCTGAAGGGATCAAAAAAGGGGACGGAAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGATCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATTGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGATCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGTGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCAGGTGACTTGTGGGCTGCCCAAATTGAAAGTTTATGGAAAGAAGTAAATGGCAACCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAACAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCCGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGCGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAACTGCAAAGAGGATGAACGAACTTGCATTCTGCTCATCGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCGGTTTTATACAACATTCTTGATTGGCCGACAAAGCCACAAGGAAAGTTGATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGTCCTTATAATTATCAGCAACTTCAAGAAATCATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTACGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGCAGGCTTGGTGAATGCAGAATTATTTTATGTGAATCAGGATCAAAACACCGATTGCAAAAGTTACAGCTTAATTTTCCAAATGATGACGTCTCCTTTGCATTGAAAGACAGTAAGGATCTACCTTGGTTGGCCAATTTCAATTTCTCCCATAAGAAACATTTGAACCCTCCTTTGGAAATGTGGGAAACATGTCAG | 2436 | 40.76 | MSRRSTRLAENANEYLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASKNFKSEGIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLDPPMKEIPDGDWICGFCEATKMGKVVQLPKPPAGKKRVRTMREKLLAGDLWAAQIESLWKEVNGNHHCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEQDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKEDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTTKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGSKHRLQKLQLNFPNDDVSFALKDSKDLPWLANFNFSHKKHLNPPLEMWETCQ | 812 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8036206 | 8064142 | + | CmaCh09G012130.1 | Cma09g01213 | 301218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g01213 | 812 | MobiDBLite | consensus disorder prediction | 19 | 37 | - | - | |
Cma09g01213 | 812 | Pfam | BAH domain | 226 | 315 | IPR001025 | GO:0003682 | |
Cma09g01213 | 812 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 209 | IPR013083 | - | |
Cma09g01213 | 812 | PANTHER | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 95 | 790 | IPR020793 | - | |
Cma09g01213 | 812 | Pfam | AAA lid domain | 620 | 653 | IPR041083 | - | |
Cma09g01213 | 812 | Pfam | PHD-finger | 147 | 191 | IPR019787 | - | |
Cma09g01213 | 812 | Pfam | ATPase family associated with various cellular activities (AAA) | 448 | 593 | IPR003959 | GO:0005524|GO:0016887 | |
Cma09g01213 | 812 | ProSiteProfiles | BAH domain profile. | 191 | 318 | IPR001025 | GO:0003682 | |
Cma09g01213 | 812 | ProSitePatterns | Zinc finger PHD-type signature. | 147 | 190 | IPR019786 | - | |
Cma09g01213 | 812 | Gene3D | - | 596 | 684 | - | - | |
Cma09g01213 | 812 | SMART | PHD_3 | 146 | 191 | IPR001965 | - | |
Cma09g01213 | 812 | SUPERFAMILY | FYVE/PHD zinc finger | 133 | 198 | IPR011011 | - | |
Cma09g01213 | 812 | Gene3D | - | 399 | 595 | IPR027417 | - | |
Cma09g01213 | 812 | SMART | BAH_4 | 119 | 318 | IPR001025 | GO:0003682 | |
Cma09g01213 | 812 | Gene3D | - | 87 | 333 | IPR043151 | - | |
Cma09g01213 | 812 | MobiDBLite | consensus disorder prediction | 19 | 55 | - | - | |
Cma09g01213 | 812 | SMART | AAA_5 | 443 | 596 | IPR003593 | - | |
Cma09g01213 | 812 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 95 | 790 | - | - | |
Cma09g01213 | 812 | ProSiteProfiles | Zinc finger PHD-type profile. | 144 | 193 | IPR019787 | - | |
Cma09g01213 | 812 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 413 | 663 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g01213 | Cma-Chr9:8036206 | Cma07g00023 | Cma-Chr7:148394 | 1.51E-06 | dispersed | |
Cma09g01213 | Cma-Chr9:8036206 | Cma20g00352 | Cma-Chr20:1726736 | 2.54E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35661 | PF00004 | AAA | 4.20E-19 | CL0023 | Cma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g01213 | K02603 | - | csv:101214082 | 1389.02 |