Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01213 ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAATATTTGAAGAAAACAATAAATAGTGAAGCTGCAACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGGAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAAAGAACTTCAAGTCTGAAGGGATCAAAAAAGGGGACGGAAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGATCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATTGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGATCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGTGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCAGGTGACTTGTGGGCTGCCCAAATTGAAAGTTTATGGAAAGAAGTAAATGGCAACCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAACAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCCGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGCGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAACTGCAAAGAGGATGAACGAACTTGCATTCTGCTCATCGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCGGTTTTATACAACATTCTTGATTGGCCGACAAAGCCACAAGGAAAGTTGATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGTCCTTATAATTATCAGCAACTTCAAGAAATCATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTACGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGCAGGCTTGGTGAATGCAGAATTATTTTATGTGAATCAGGATCAAAACACCGATTGCAAAAGTTACAGCTTAATTTTCCAAATGATGACGTCTCCTTTGCATTGAAAGACAGTAAGGATCTACCTTGGTTGGCCAATTTCAATTTCTCCCATAAGAAACATTTGAACCCTCCTTTGGAAATGTGGGAAACATGTCAG 2436 40.76 MSRRSTRLAENANEYLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASKNFKSEGIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLDPPMKEIPDGDWICGFCEATKMGKVVQLPKPPAGKKRVRTMREKLLAGDLWAAQIESLWKEVNGNHHCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEQDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKEDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTTKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGSKHRLQKLQLNFPNDDVSFALKDSKDLPWLANFNFSHKKHLNPPLEMWETCQ 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8036206 8064142 + CmaCh09G012130.1 Cma09g01213 301218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01213 812 MobiDBLite consensus disorder prediction 19 37 - -
Cma09g01213 812 Pfam BAH domain 226 315 IPR001025 GO:0003682
Cma09g01213 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 209 IPR013083 -
Cma09g01213 812 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 95 790 IPR020793 -
Cma09g01213 812 Pfam AAA lid domain 620 653 IPR041083 -
Cma09g01213 812 Pfam PHD-finger 147 191 IPR019787 -
Cma09g01213 812 Pfam ATPase family associated with various cellular activities (AAA) 448 593 IPR003959 GO:0005524|GO:0016887
Cma09g01213 812 ProSiteProfiles BAH domain profile. 191 318 IPR001025 GO:0003682
Cma09g01213 812 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Cma09g01213 812 Gene3D - 596 684 - -
Cma09g01213 812 SMART PHD_3 146 191 IPR001965 -
Cma09g01213 812 SUPERFAMILY FYVE/PHD zinc finger 133 198 IPR011011 -
Cma09g01213 812 Gene3D - 399 595 IPR027417 -
Cma09g01213 812 SMART BAH_4 119 318 IPR001025 GO:0003682
Cma09g01213 812 Gene3D - 87 333 IPR043151 -
Cma09g01213 812 MobiDBLite consensus disorder prediction 19 55 - -
Cma09g01213 812 SMART AAA_5 443 596 IPR003593 -
Cma09g01213 812 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 95 790 - -
Cma09g01213 812 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Cma09g01213 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 663 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01213 Cma-Chr9:8036206 Cma07g00023 Cma-Chr7:148394 1.51E-06 dispersed
Cma09g01213 Cma-Chr9:8036206 Cma20g00352 Cma-Chr20:1726736 2.54E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35661 PF00004 AAA 4.20E-19 CL0023 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01213 K02603 - csv:101214082 1389.02