Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma09g01221 | ATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCTTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGAAACTCCTCCGACCTAGACTCCCCTGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCACTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAACTGAAAAGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCGGATATGTTGGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAGATTCAGGAACTCACCGAGCATCAGCGCAGGTGCACATGCACGGTTAAGGAATAA | 708 | 53.67 | MQSTTGGATGSRSSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLAGNSSDLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCTCTVKE | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 8127541 | 8133151 | + | CmaCh09G012210.1 | Cma09g01221 | 301226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma09g01221 | 235 | MobiDBLite | consensus disorder prediction | 117 | 136 | - | - | |
| Cma09g01221 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 168 | 228 | IPR036638 | GO:0046983 | |
| Cma09g01221 | 235 | CDD | bHLH_AtbHLH_like | 170 | 222 | IPR045239 | - | |
| Cma09g01221 | 235 | Gene3D | - | 166 | 235 | IPR036638 | GO:0046983 | |
| Cma09g01221 | 235 | SMART | finulus | 171 | 221 | IPR011598 | GO:0046983 | |
| Cma09g01221 | 235 | Coils | Coil | 205 | 225 | - | - | |
| Cma09g01221 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 10 | 233 | - | - | |
| Cma09g01221 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 10 | 233 | - | - | |
| Cma09g01221 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 165 | 215 | IPR011598 | GO:0046983 | |
| Cma09g01221 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 170 | 216 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g01221 | Cma-Chr9:8127541 | Cma10g00942 | Cma-Chr10:4732525 | 1.43E-39 | dispersed | |
| Cma18g00015 | Cma-Chr18:65599 | Cma09g01221 | Cma-Chr9:8127541 | 9.62E-08 | dispersed | |
| Cma09g01221 | Cma-Chr9:8127541 | Cma11g00837 | Cma-Chr11:4218813 | 3.62E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35662 | PF00010 | HLH | 2.80E-10 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma09g01221 | - | - | csv:101209773 | 348.206 |