Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01239 ATGGCTCGTGGGAAGGTTCAATTGAAGAGGATAGAGAACCCTGTGCACAGGCAAGTGACGTTCTGTAAGCGCCGAGCTGGGCTGCTTAAGAAGGCTAAGGAGCTGTCTGTGTTGTGCGATGCTGAAATTGGAGTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAACCACACCAATGGGAGTCAGCCACCAGAGCCACGAATAGACAACCAAACCCTGGAAGTAAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTAGGAGGAGGAGGAGTGGAAGGAATAAGGACATTGGATGAGCTTGATATGCTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGATGCATTGAGGAACCAGGAACTCATACTGAAAGCTGCCAACAAGTATCTTCACGATAAGATGGAGGAAAACATTTGCAACACAACTAACATTGAAGCTGTGAATATTACTAACTGTCAATATCCACTAACAATACAGGATGAGTTATTTCAGCTTTGCACTTAA 621 43.8 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPRIDNQTLEVKEEVNRLKQEIEVLKGLRNALGGGGVEGIRTLDELDMLEKQLEIWICQVRSTKMKFMCEEIDALRNQELILKAANKYLHDKMEENICNTTNIEAVNITNCQYPLTIQDELFQLCT 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8306165 8313647 + CmaCh09G012390.1 Cma09g01239 301244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01239 206 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g01239 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Cma09g01239 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 203 - -
Cma09g01239 206 Coils Coil 88 108 - -
Cma09g01239 206 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cma09g01239 206 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g01239 206 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Cma09g01239 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Cma09g01239 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01239 Cma-Chr9:8306165 Cma14g01149 Cma-Chr14:9050926 2.04E-37 dispersed
Cma09g01239 Cma-Chr9:8306165 Cma08g00172 Cma-Chr8:956593 2.37E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35664 PF01486 K-box 4.10E-17 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01239 - - csv:105435626 372.859