Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01244 ATGTTGTTGCCTGTTTTGGTGCTGCTACTTGTGGCGGCGGCCGCGGCGGCTTTCGGCCAGAATGGTAGTACGGACGGCGGCGGAGGGAGGCCGGCGATGGTGCCTGCCATGTTCATATTTGGAGACTCTTTGATTGATAATGGGAATAATAACAATCTTCCGACGTTTGCAAGAGCTAACTATTTCCCTTATGGTATTGATTTTGCTGATGGCCCAACTGGTCGTTTCTCCAATGGATACACTATTGTTGATGAAATAGCGAAGCTCTTAGGACTACCCTTAATTCCTCCGAGCGCAGCTCCAGCAACTGGACCACTACGCGGACTAAATTATGCGTCGGCTGCTTCGGGAATCCTCGATATTACTGGAAGAAACTTTATCGGTCGCATACCCTTCAATCAACAAATAAGGAACTTCGAGAACACGCTGGATCAAATAACCGGCAACCTCGGCGCCGCCACGGTGGCTCCCGTGGTGGCTCGCTGCATATTCTTCGTTGGAATGGGCAGTAACGACTACCTTAACAACTATCTAATGCCTAATTATCCTACCAGATCTCAATACAATAGCCGGCAATTCGCCGATCTTTTGACCCAACAGTACACTCAGCAACTCAGCAGGCTTTACAACCTCGGAGCTCGGAAGTTCATTATCCCCGGTATCGGAACAATGGAGTGCATTCCCAACGTATTAGCTCGAAGCTCCGATGGAAGATGCTCGGAAGAAGTAAGCCAGCTCGTTCGAGATTTCAACGCGAACGTTAGAATAATGATTGGAAACTTGAATGCCAATCTTCCCGGTTCGAGGTTCACTTACGTTAATATTGCTCGTATGAATGGTGATATCCTTGCAAATCCTAGAGCTTATGGATTCACAGTGGCGGATCGTGGGTGCTGTGGGATTGGGAGGAACAGGGGACAGATAACATGTCTTCCATACCAAATGCCTTGTCTGAATCGAGACCAGTATGTGTTTTGGGATGCGTTTCATCCAACTGAGAGAGTGAATATCATCATGGCAAGAAGGGCTTTCAATGGCGACATGTCCGTTGCTTACCCTTTTAACATACAACAGCTTGCCAATCTTGATATCTAA 1095 47.67 MLLPVLVLLLVAAAAAAFGQNGSTDGGGGRPAMVPAMFIFGDSLIDNGNNNNLPTFARANYFPYGIDFADGPTGRFSNGYTIVDEIAKLLGLPLIPPSAAPATGPLRGLNYASAASGILDITGRNFIGRIPFNQQIRNFENTLDQITGNLGAATVAPVVARCIFFVGMGSNDYLNNYLMPNYPTRSQYNSRQFADLLTQQYTQQLSRLYNLGARKFIIPGIGTMECIPNVLARSSDGRCSEEVSQLVRDFNANVRIMIGNLNANLPGSRFTYVNIARMNGDILANPRAYGFTVADRGCCGIGRNRGQITCLPYQMPCLNRDQYVFWDAFHPTERVNIIMARRAFNGDMSVAYPFNIQQLANLDI 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8334540 8336895 + CmaCh09G012440.1 Cma09g01244 301249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01244 364 Gene3D SGNH hydrolase 30 347 IPR036514 -
Cma09g01244 364 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 7 362 - -
Cma09g01244 364 CDD SGNH_plant_lipase_like 35 347 IPR035669 -
Cma09g01244 364 Pfam GDSL-like Lipase/Acylhydrolase 38 342 IPR001087 GO:0016788
Cma09g01244 364 PANTHER OS05G0419800 PROTEIN 7 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01244 - - - csv:101209444 632.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00151 Cma-Chr7:776084 Cma09g01244 Cma-Chr9:8334540 1.00E-112 dispersed
Cma09g01244 Cma-Chr9:8334540 Cma18g00287 Cma-Chr18:1526887 1.12E-118 dispersed
Cma04g03032 Cma-Chr4:19787439 Cma09g01244 Cma-Chr9:8334540 0 transposed
Cma10g01027 Cma-Chr10:5552408 Cma09g01244 Cma-Chr9:8334540 8.27E-75 transposed
Cma12g00983 Cma-Chr12:7823407 Cma09g01244 Cma-Chr9:8334540 1.03E-72 transposed
Cma01g00840 Cma-Chr1:4599705 Cma09g01244 Cma-Chr9:8334540 3.71E-111 wgd
Cma01g00940 Cma-Chr1:5963191 Cma09g01244 Cma-Chr9:8334540 3.04E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01244 Cma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0