Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01247 ATGGGCTGCCTTTGCTCAAGAGATTCCTCAGAACCAGAGGATGGCAGTCAATTATCTGAAAAACATTTGGATGAATCTTCGGTTCAATTGGTTGCTCCTTCTCCCTTAAAAAGAGAGAATATGTTGCAAGAGATTCAGTTGTCAAGGCAGGAATCAAAAGCAAATGGGAGTTCTGTTCATAAAAGAAAGGGTAATGGAGGGTCTGTCCATCGAGCAAAGGAGGGTGATGAATCTGTGAATAAATCCATGAAGGCTGCAAAAGTAAATGATGATAATGCTTCAGGAGGTGGAAAACGGCCTGACATTTTTAGGTTAGCTAGCATGTCTAAAGCGGTTGAAGCTGAACATGTCATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCTATCAAAGGGTGGGTGCCTCGCCGGGTTGACTCCTTTGAAAAGTTGGATAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTGAGATTTGTAAATAAGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTGGATCATCCAAATGTTATGAAGCTCGAGGCTCTAGTCGCTTCCAGAATGTCGAGCAACTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGTCTTGTGGCAGCTCCTGGACATAAGTTTACGGAGGCTCAAATTAAATGTTACGTGCAACAATTGCTGCATGGACTTGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGCTTCAAATCTTCTCATTGACAATAATGGTGTGCTCAAGATTGCAGACTTTGGTCTTGCTACCTCTTTTCATCCTGATCGAAAGCAGCCATTGACAAGTCGGGTAGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTCGGCGCTACTCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGTTGTATCACTGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATCCACAAGATTTTTAAGCTCTGTGGCTCACCATCTGAGGAATTCTGGCGGAGAACAAAGTTGCCACATGCAACCAGCTACAAACCACAACACCGTTATAAAAGCTGCCTCTCTGATACTTACAAAAGTTTCCCTTCTTCAGCTCTGGCTCTCATTAATAAGCTTCTTGCTATTGAACCAGAGCACAGAGGATCAGCTTCTTCAGCTCTTGGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCCTCAAGCTTACCAAAGTATGCTCCGAGCAAAGAATTTGATGCCAAGCTGCGGAATGAAGAAGAAAGGAAGAGAAAAGCAGAAGCTGTGAAGGGATGGCATCCTGAATCAGTAAGAAGGGGCTCAAGAGACACCAAGGTAGTTCCTACTCCTGAATTCAGTGCTCAAGGAGATGTGACCATAAAGGTACACCCGCTCGCGAAAAAGATTAACAAATACACCTCCCAAGAGGACAGCGAGCCTCCGAGAGTTGCGCAGAGTAGGTACGGCCACTCGACATCTATGGTGCACCCAAGCATTGCAGGTTCATGGGCCAAGCCTACTGGAGCCGCAAGAAATTGTGTAGAGTTAAAGACACAGAAATCTCAGATGCATCAGCCAGTGGGAGATTTATCAACCTGTGCTCTCAAGAAGGAAGAGGGTTGTGTTCAAAAGAAGACCAGAATGCAATTCTCAGGACCGTTGGTGGCTACAGGGGGAACCATTGAAGACTTGTTGAAGGATCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGTCTCGACAAAGAGAAGAACACGAGTTAG 1878 45.21 MGCLCSRDSSEPEDGSQLSEKHLDESSVQLVAPSPLKRENMLQEIQLSRQESKANGSSVHKRKGNGGSVHRAKEGDESVNKSMKAAKVNDDNASGGGKRPDIFRLASMSKAVEAEHVMAGWPSWLASVAGEAIKGWVPRRVDSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNKDPESVRFMAREIYILRKLDHPNVMKLEALVASRMSSNLYLVFEYMEHDLAGLVAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKASNLLIDNNGVLKIADFGLATSFHPDRKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCITAELFAGKPIMPGRTEVEQIHKIFKLCGSPSEEFWRRTKLPHATSYKPQHRYKSCLSDTYKSFPSSALALINKLLAIEPEHRGSASSALGSEFFRTEPLPCDPSSLPKYAPSKEFDAKLRNEEERKRKAEAVKGWHPESVRRGSRDTKVVPTPEFSAQGDVTIKVHPLAKKINKYTSQEDSEPPRVAQSRYGHSTSMVHPSIAGSWAKPTGAARNCVELKTQKSQMHQPVGDLSTCALKKEEGCVQKKTRMQFSGPLVATGGTIEDLLKDHERQIQQAFRKARLDKEKNTS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8355019 8361558 - CmaCh09G012470.1 Cma09g01247 301252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01247 625 MobiDBLite consensus disorder prediction 68 84 - -
Cma09g01247 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cma09g01247 625 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01247 625 PANTHER CELL DIVISION PROTEIN KINASE 70 618 - -
Cma09g01247 625 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Cma09g01247 625 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Cma09g01247 625 MobiDBLite consensus disorder prediction 461 486 - -
Cma09g01247 625 SUPERFAMILY Protein kinase-like (PK-like) 137 436 IPR011009 -
Cma09g01247 625 CDD STKc_CDK9_like 144 428 - -
Cma09g01247 625 Gene3D Transferase(Phosphotransferase) domain 1 227 468 - -
Cma09g01247 625 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01247 625 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01247 625 Coils Coil 602 622 - -
Cma09g01247 625 MobiDBLite consensus disorder prediction 1 96 - -
Cma09g01247 625 MobiDBLite consensus disorder prediction 41 62 - -
Cma09g01247 625 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 70 618 - -
Cma09g01247 625 Coils Coil 446 466 - -
Cma09g01247 625 MobiDBLite consensus disorder prediction 461 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01247 Cma-Chr9:8355019 Cma04g00549 Cma-Chr4:2787202 2.42E-07 dispersed
Cma04g01938 Cma-Chr4:10569305 Cma09g01247 Cma-Chr9:8355019 5.32E-15 transposed
Cma09g01196 Cma-Chr9:7704172 Cma09g01247 Cma-Chr9:8355019 3.28E-52 transposed
Cma01g00843 Cma-Chr1:4632630 Cma09g01247 Cma-Chr9:8355019 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68816 PF00069 Pkinase 2.30E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01247 K08819 - csv:101208709 1052.74