Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g01247 | ATGGGCTGCCTTTGCTCAAGAGATTCCTCAGAACCAGAGGATGGCAGTCAATTATCTGAAAAACATTTGGATGAATCTTCGGTTCAATTGGTTGCTCCTTCTCCCTTAAAAAGAGAGAATATGTTGCAAGAGATTCAGTTGTCAAGGCAGGAATCAAAAGCAAATGGGAGTTCTGTTCATAAAAGAAAGGGTAATGGAGGGTCTGTCCATCGAGCAAAGGAGGGTGATGAATCTGTGAATAAATCCATGAAGGCTGCAAAAGTAAATGATGATAATGCTTCAGGAGGTGGAAAACGGCCTGACATTTTTAGGTTAGCTAGCATGTCTAAAGCGGTTGAAGCTGAACATGTCATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCTATCAAAGGGTGGGTGCCTCGCCGGGTTGACTCCTTTGAAAAGTTGGATAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTGAGATTTGTAAATAAGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTGGATCATCCAAATGTTATGAAGCTCGAGGCTCTAGTCGCTTCCAGAATGTCGAGCAACTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGTCTTGTGGCAGCTCCTGGACATAAGTTTACGGAGGCTCAAATTAAATGTTACGTGCAACAATTGCTGCATGGACTTGAACACTGTCATAGTCGGGGAATTCTACACCGGGATATCAAAGCTTCAAATCTTCTCATTGACAATAATGGTGTGCTCAAGATTGCAGACTTTGGTCTTGCTACCTCTTTTCATCCTGATCGAAAGCAGCCATTGACAAGTCGGGTAGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTCGGCGCTACTCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGTTGTATCACTGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATCCACAAGATTTTTAAGCTCTGTGGCTCACCATCTGAGGAATTCTGGCGGAGAACAAAGTTGCCACATGCAACCAGCTACAAACCACAACACCGTTATAAAAGCTGCCTCTCTGATACTTACAAAAGTTTCCCTTCTTCAGCTCTGGCTCTCATTAATAAGCTTCTTGCTATTGAACCAGAGCACAGAGGATCAGCTTCTTCAGCTCTTGGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCCTCAAGCTTACCAAAGTATGCTCCGAGCAAAGAATTTGATGCCAAGCTGCGGAATGAAGAAGAAAGGAAGAGAAAAGCAGAAGCTGTGAAGGGATGGCATCCTGAATCAGTAAGAAGGGGCTCAAGAGACACCAAGGTAGTTCCTACTCCTGAATTCAGTGCTCAAGGAGATGTGACCATAAAGGTACACCCGCTCGCGAAAAAGATTAACAAATACACCTCCCAAGAGGACAGCGAGCCTCCGAGAGTTGCGCAGAGTAGGTACGGCCACTCGACATCTATGGTGCACCCAAGCATTGCAGGTTCATGGGCCAAGCCTACTGGAGCCGCAAGAAATTGTGTAGAGTTAAAGACACAGAAATCTCAGATGCATCAGCCAGTGGGAGATTTATCAACCTGTGCTCTCAAGAAGGAAGAGGGTTGTGTTCAAAAGAAGACCAGAATGCAATTCTCAGGACCGTTGGTGGCTACAGGGGGAACCATTGAAGACTTGTTGAAGGATCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGTCTCGACAAAGAGAAGAACACGAGTTAG | 1878 | 45.21 | MGCLCSRDSSEPEDGSQLSEKHLDESSVQLVAPSPLKRENMLQEIQLSRQESKANGSSVHKRKGNGGSVHRAKEGDESVNKSMKAAKVNDDNASGGGKRPDIFRLASMSKAVEAEHVMAGWPSWLASVAGEAIKGWVPRRVDSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNKDPESVRFMAREIYILRKLDHPNVMKLEALVASRMSSNLYLVFEYMEHDLAGLVAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKASNLLIDNNGVLKIADFGLATSFHPDRKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCITAELFAGKPIMPGRTEVEQIHKIFKLCGSPSEEFWRRTKLPHATSYKPQHRYKSCLSDTYKSFPSSALALINKLLAIEPEHRGSASSALGSEFFRTEPLPCDPSSLPKYAPSKEFDAKLRNEEERKRKAEAVKGWHPESVRRGSRDTKVVPTPEFSAQGDVTIKVHPLAKKINKYTSQEDSEPPRVAQSRYGHSTSMVHPSIAGSWAKPTGAARNCVELKTQKSQMHQPVGDLSTCALKKEEGCVQKKTRMQFSGPLVATGGTIEDLLKDHERQIQQAFRKARLDKEKNTS | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8355019 | 8361558 | - | CmaCh09G012470.1 | Cma09g01247 | 301252 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g01247 | 625 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
Cma09g01247 | 625 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 264 | 276 | IPR008271 | GO:0004672|GO:0006468 | |
Cma09g01247 | 625 | Pfam | Protein kinase domain | 144 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g01247 | 625 | PANTHER | CELL DIVISION PROTEIN KINASE | 70 | 618 | - | - | |
Cma09g01247 | 625 | Gene3D | Phosphorylase Kinase; domain 1 | 131 | 226 | - | - | |
Cma09g01247 | 625 | ProSitePatterns | Protein kinases ATP-binding region signature. | 150 | 173 | IPR017441 | GO:0005524 | |
Cma09g01247 | 625 | MobiDBLite | consensus disorder prediction | 461 | 486 | - | - | |
Cma09g01247 | 625 | SUPERFAMILY | Protein kinase-like (PK-like) | 137 | 436 | IPR011009 | - | |
Cma09g01247 | 625 | CDD | STKc_CDK9_like | 144 | 428 | - | - | |
Cma09g01247 | 625 | Gene3D | Transferase(Phosphotransferase) domain 1 | 227 | 468 | - | - | |
Cma09g01247 | 625 | SMART | serkin_6 | 144 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g01247 | 625 | ProSiteProfiles | Protein kinase domain profile. | 144 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma09g01247 | 625 | Coils | Coil | 602 | 622 | - | - | |
Cma09g01247 | 625 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
Cma09g01247 | 625 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Cma09g01247 | 625 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 70 | 618 | - | - | |
Cma09g01247 | 625 | Coils | Coil | 446 | 466 | - | - | |
Cma09g01247 | 625 | MobiDBLite | consensus disorder prediction | 461 | 482 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g01247 | Cma-Chr9:8355019 | Cma04g00549 | Cma-Chr4:2787202 | 2.42E-07 | dispersed | |
Cma04g01938 | Cma-Chr4:10569305 | Cma09g01247 | Cma-Chr9:8355019 | 5.32E-15 | transposed | |
Cma09g01196 | Cma-Chr9:7704172 | Cma09g01247 | Cma-Chr9:8355019 | 3.28E-52 | transposed | |
Cma01g00843 | Cma-Chr1:4632630 | Cma09g01247 | Cma-Chr9:8355019 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68816 | PF00069 | Pkinase | 2.30E-71 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g01247 | K08819 | - | csv:101208709 | 1052.74 |