Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01255 ATGGGAGATCCTAGCTCAACGGGCAGCCACGGCGCAGCGACGTCTAGCTACCGAGGCGTTCGCAAGAGGAAATGGGGCAAATGGGTGTCGGAGATTCGCGAGCCAGGAAAGAAGACGAGAATTTGGTTAGGGAGTTTCGAGACACCGGAGATGGCAGCGGCGGCATATGATGCCGCTGCCTATCACTTCCGCGGTCACGATGCTCGCCTCAACTTCCCACATCTTGCCAACTCTCTCCCCTTCCCTAATGGCTCCACTCCGGATGATATCCGTTTCGCTGCCCATAGGGCAGCATTGCGAGTACGAACAACACCAGGTGTTGCGGCGGAGGGTGATCGAAGTTCCACGTCGAATGTTGCACCAGTCACTGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGAAGATGTGGATGGAAATGTCGTCGGAGTTTTCGAATGGGACTGTGTTTGTTGATGAGATGGAGGATGCGATGTGGGAGAATATGCATAATGATTCATTGTGGGATCCTTAG 537 54.38 MGDPSSTGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDAAAYHFRGHDARLNFPHLANSLPFPNGSTPDDIRFAAHRAALRVRTTPGVAAEGDRSSTSNVAPVTVRLSPSQIQAINESPLDSPKMWMEMSSEFSNGTVFVDEMEDAMWENMHNDSLWDP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8430579 8431115 + CmaCh09G012550.1 Cma09g01255 301260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01255 178 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Cma09g01255 178 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Cma09g01255 178 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Cma09g01255 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 177 - -
Cma09g01255 178 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cma09g01255 178 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Cma09g01255 178 MobiDBLite consensus disorder prediction 1 22 - -
Cma09g01255 178 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cma09g01255 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 7 177 - -
Cma09g01255 178 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Cma09g01255 178 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01255 Cma-Chr9:8430579 Cma16g01125 Cma-Chr16:8654856 1.94E-31 dispersed
Cma09g01255 Cma-Chr9:8430579 Cma09g01258 Cma-Chr9:8466778 2.26E-50 proximal
Cma01g00851 Cma-Chr1:4787817 Cma09g01255 Cma-Chr9:8430579 2.08E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35665 PF00847 AP2 5.90E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01255 - - csv:101207243 292.352