Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01258 ATGGCCGAACCCACTTACACCGGCGTCCGTAAGCGCAAATGGGGCAAATGGGTCTCCGAAATCCGCCAACCCGGCAAAAAAACCCGCATCTGGCTCGGCAGCTACCACCTTCCCCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGTGGCCCAAACGCCCGTCTCAACTTCCCCGACCTCATCGACTCCTTCCCCCGCCCCGCTACCTCCTCTCCCGACGACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCCTCGCTAACACCAAGCCACCGCCTGCTGCCCAACACCCACCGGCGCCGGTTCGAATCGGGCTGTCTCCGAGCCAAATTCAGGCGATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTAGAGGATTATTTGTGCGATGGATTTGATGTGGAAGATAATTCCATTTGGGATTATTCTTCACTCTAA 483 59.21 MAEPTYTGVRKRKWGKWVSEIRQPGKKTRIWLGSYHLPQMAAAAYDVAALHLRGPNARLNFPDLIDSFPRPATSSPDDIQAAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALSLEDYLCDGFDVEDNSIWDYSSL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8466778 8467260 + CmaCh09G012580.1 Cma09g01258 301263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01258 160 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Cma09g01258 160 Pfam AP2 domain 5 54 IPR001471 GO:0003700|GO:0006355
Cma09g01258 160 Gene3D AP2/ERF domain 5 63 IPR036955 GO:0003700|GO:0006355
Cma09g01258 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 5 156 - -
Cma09g01258 160 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cma09g01258 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 156 - -
Cma09g01258 160 SUPERFAMILY DNA-binding domain 5 63 IPR016177 GO:0003677
Cma09g01258 160 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Cma09g01258 160 PRINTS Ethylene responsive element binding protein signature 44 64 IPR001471 GO:0003700|GO:0006355
Cma09g01258 160 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00851 Cma-Chr1:4787817 Cma09g01258 Cma-Chr9:8466778 4.81E-53 dispersed
Cma01g00852 Cma-Chr1:4796487 Cma09g01258 Cma-Chr9:8466778 5.56E-61 dispersed
Cma09g01258 Cma-Chr9:8466778 Cma05g01358 Cma-Chr5:10234374 8.86E-33 dispersed
Cma09g01255 Cma-Chr9:8430579 Cma09g01258 Cma-Chr9:8466778 2.26E-50 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35666 PF00847 AP2 2.00E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01258 - - csv:101207003 239.965