Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g01258 | ATGGCCGAACCCACTTACACCGGCGTCCGTAAGCGCAAATGGGGCAAATGGGTCTCCGAAATCCGCCAACCCGGCAAAAAAACCCGCATCTGGCTCGGCAGCTACCACCTTCCCCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGTGGCCCAAACGCCCGTCTCAACTTCCCCGACCTCATCGACTCCTTCCCCCGCCCCGCTACCTCCTCTCCCGACGACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCCTCGCTAACACCAAGCCACCGCCTGCTGCCCAACACCCACCGGCGCCGGTTCGAATCGGGCTGTCTCCGAGCCAAATTCAGGCGATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTAGAGGATTATTTGTGCGATGGATTTGATGTGGAAGATAATTCCATTTGGGATTATTCTTCACTCTAA | 483 | 59.21 | MAEPTYTGVRKRKWGKWVSEIRQPGKKTRIWLGSYHLPQMAAAAYDVAALHLRGPNARLNFPDLIDSFPRPATSSPDDIQAAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALSLEDYLCDGFDVEDNSIWDYSSL | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8466778 | 8467260 | + | CmaCh09G012580.1 | Cma09g01258 | 301263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g01258 | 160 | ProSiteProfiles | AP2/ERF domain profile. | 5 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | Pfam | AP2 domain | 5 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | Gene3D | AP2/ERF domain | 5 | 63 | IPR036955 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 | 5 | 156 | - | - | |
Cma09g01258 | 160 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 156 | - | - | |
Cma09g01258 | 160 | SUPERFAMILY | DNA-binding domain | 5 | 63 | IPR016177 | GO:0003677 | |
Cma09g01258 | 160 | PRINTS | Ethylene responsive element binding protein signature | 6 | 17 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | PRINTS | Ethylene responsive element binding protein signature | 44 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g01258 | 160 | SMART | rav1_2 | 5 | 68 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00851 | Cma-Chr1:4787817 | Cma09g01258 | Cma-Chr9:8466778 | 4.81E-53 | dispersed | |
Cma01g00852 | Cma-Chr1:4796487 | Cma09g01258 | Cma-Chr9:8466778 | 5.56E-61 | dispersed | |
Cma09g01258 | Cma-Chr9:8466778 | Cma05g01358 | Cma-Chr5:10234374 | 8.86E-33 | dispersed | |
Cma09g01255 | Cma-Chr9:8430579 | Cma09g01258 | Cma-Chr9:8466778 | 2.26E-50 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35666 | PF00847 | AP2 | 2.00E-11 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g01258 | - | - | csv:101207003 | 239.965 |