Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01282 ATGGCCGCCTTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACCACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCCTTCTGGAAGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGCTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTGTTCGCCGATTCGCAGGTGTTCGATTGCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCGAAGAGAATCGATATCGTGAAGGAGATCGTGACGGAGTTCGAATCCGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTTGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTTTAA 723 52.97 MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8822951 8823673 - CmaCh09G012820.1 Cma09g01282 301287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01282 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 Gene3D - 57 149 IPR026015 -
Cma09g01282 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cma09g01282 240 PANTHER BNACNNG66500D PROTEIN 47 239 - -
Cma09g01282 240 PANTHER ATP SYNTHASE DELTA CHAIN 47 239 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cma09g01282 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 55 157 IPR026015 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00931 Cma09g01282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00980 Cma-Chr6:6648594 Cma09g01282 Cma-Chr9:8822951 3.96E-18 dispersed
Cma09g01282 Cma-Chr9:8822951 Cma14g01006 Cma-Chr14:5295228 6.76E-15 dispersed
Cma01g00931 Cma-Chr1:5787559 Cma09g01282 Cma-Chr9:8822951 2.47E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01282 K02113 - csv:101211740 377.481