Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01283 ATGAAGACACTTGTTGCTTTTGACAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAGTCGACGCCACGCAGTACATACGAGCACGAGGATGGAGTATCATGTCTTACTTGGATTGGCACATCGAGATATCTTGAAACCGGATGTGTCGATGGTCGAGTACGAATATGGGATAGCCTCTCTGAAGAATGTGTAAGAACCTTCACTGGGCACTCTGACGCCATCCAATCTCTCTCTCGGTGTCTGCCAATCATGAGTACCTTGTTTCTATTGCTCTCGATACATCCGCTCGGATTTTTGAGATTGCTGAGTATGATTGATTGA 351 47.01 MKTLVAFDSSPWAATGGMDQKLIIWDLRQSTPRSTYEHEDGVSCLTWIGTSRYLETGCVDGRVRIWDSLSEECVRTFTGHSDAIQSLSRCLPIMSTLFLLLSIHPLGFLRLLSMID 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8826279 8828560 + CmaCh09G012830.1 Cma09g01283 301288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01283 116 ProSiteProfiles Trp-Asp (WD) repeats profile. 35 76 IPR001680 GO:0005515
Cma09g01283 116 Gene3D - 3 106 IPR015943 GO:0005515
Cma09g01283 116 SUPERFAMILY WD40 repeat-like 5 95 IPR036322 GO:0005515
Cma09g01283 116 Pfam Anaphase-promoting complex subunit 4 WD40 domain 24 87 IPR024977 -
Cma09g01283 116 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 35 67 - -
Cma09g01283 116 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 88 - -
Cma09g01283 116 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 5 88 - -
Cma09g01283 116 SMART WD40_4 29 67 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01283 K24725 AAMP; angio-associated migratory cell protein - csv:101211245 158.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01283 Cma-Chr9:8826279 Cma14g01109 Cma-Chr14:8185962 3.37E-45 dispersed
Cma09g01283 Cma-Chr9:8826279 Cma09g00415 Cma-Chr9:1771752 6.56E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01283 Cma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0