Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01288 ATGCAGCCGTTCAGTGTTTCGTCGGAGATTTCCACCTCCCAACTTCCATGGAAGCACCGTCTTACTCTCCGATTCGCCGCCCTACTCTTCAACGCTTCTATCCGATCAGATCTCACCGTTAATCGCCGGCTTCTCAATTTCCTCGACCCCAAAATCCCTCCCAATCCCAATTCAATCCACGCCGTTTCCTCTTCCGATCTCACCATCGACGCCTCTCGTGATCTCTTCCTCCGAATCTTCACCCCCACCGTCGCCGCTACCGACTCACTCCTGCCGCCGGTAATTTTCTACTTTCACGGTGGCGGTTTCGCCTTCGGTTCTGCCGCCGCCACGTCAATGGACATGGCCGCCCGCCGTTTCAGCAAGGAACTCGGAGCTGTCGTAATCTCCGTGAATTACCGTCTCTCTCCTCAGTTCCGATTCCCTTGCCAATACGACGACGGATTTGACGCCGTGAAATTCATCGACGAAATGGACGACGAAGATCCACTATTGGGTAGGGCAGATCTGAGCCGTTGCTTCATTTTGGGGGAAAGCGCCGGGGGGAATCTAGGGCACCACGTGGCAGTGAGAGCGAGCGAGTATGCTTTCAAGAGAGTGAAGGTAATTGGGTTTATAGCGTCGCAGCCGTTTTTCGGCGGAGAGGAGAGAACAGAGTCGGAGATTCGGCTCTGTAATCAGCCTCCGTTAACTCTGAAACTTGCGGATTGGTTCTGGAAGGCGTTTTTGCCGGCGGGAGAAGACCGGGATCACGCGGCGGCGAATGTGAATGGACCGAACGGAAGGGATGTCTCCGGGCTGAGGAATTTTCCGGCGACGATTATTTTGGCCGGAGGATTGGATTTTCTGATAGATCGGCAGAGGAGGTACTACGAGGAGCTGAAGAGAATGGGAAAGGATGTGAAATTGGTGGTGTTTACGAACGGCGTCCATGGATTCTTTAGCTTTGAGGATCTGCCGGAATATTCTCTAATGATTAAGGAGATGAGGGATTTCATTGGAATGTTTCACCGGAATATTCTTTAA 1026 52.63 MQPFSVSSEISTSQLPWKHRLTLRFAALLFNASIRSDLTVNRRLLNFLDPKIPPNPNSIHAVSSSDLTIDASRDLFLRIFTPTVAATDSLLPPVIFYFHGGGFAFGSAAATSMDMAARRFSKELGAVVISVNYRLSPQFRFPCQYDDGFDAVKFIDEMDDEDPLLGRADLSRCFILGESAGGNLGHHVAVRASEYAFKRVKVIGFIASQPFFGGEERTESEIRLCNQPPLTLKLADWFWKAFLPAGEDRDHAAANVNGPNGRDVSGLRNFPATIILAGGLDFLIDRQRRYYEELKRMGKDVKLVVFTNGVHGFFSFEDLPEYSLMIKEMRDFIGMFHRNIL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8886495 8887520 - CmaCh09G012880.1 Cma09g01288 301293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01288 341 PANTHER ARYLACETAMIDE DEACETYLASE 10 336 - -
Cma09g01288 341 SUPERFAMILY alpha/beta-Hydrolases 45 333 IPR029058 -
Cma09g01288 341 Pfam alpha/beta hydrolase fold 95 314 IPR013094 GO:0016787
Cma09g01288 341 PANTHER ACETYL ESTERASE 10 336 - -
Cma09g01288 341 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 95 111 IPR002168 GO:0016787
Cma09g01288 341 Gene3D alpha/beta hydrolase 4 334 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01288 - - - csv:101202912 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00818 Cma-Chr7:3790647 Cma09g01288 Cma-Chr9:8886495 1.62E-47 dispersed
Cma08g00288 Cma-Chr8:1663679 Cma09g01288 Cma-Chr9:8886495 1.12E-108 dispersed
Cma09g01199 Cma-Chr9:7772195 Cma09g01288 Cma-Chr9:8886495 5.01E-104 dispersed
Cma09g01288 Cma-Chr9:8886495 Cma10g01110 Cma-Chr10:7518689 1.76E-69 dispersed
Cma04g03020 Cma-Chr4:19715716 Cma09g01288 Cma-Chr9:8886495 1.04E-113 transposed
Cma01g00879 Cma-Chr1:4962173 Cma09g01288 Cma-Chr9:8886495 8.32E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01288 Cma_Chr09 FPKM 4.820663 7.668895 4.369746 5.713783 10.142811 8.454129 7.897467 5.777498 7.262442 5.66226