Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01291 ATGGACGCGATCGAGGAGTTGGGTGAATTGGCTGAATCGATGCGCCAAGCGGCGGCTTTGCTTGCCGATGAAGATGTTGACGAGAATTCTGCTTCTAGTGGTTCTTCTCGTAGGGCTGTGACTTTCCTCAACGTTGTGGCTTTGGGCAATGTTGGTGCTGGCAAATCTGCAGTTTTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGATCTGCAGAGGGATAGTTCTTTGAGTAGCAAATCAATCATTCTGCAAATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGAGCCGAGATGAAATATATCTAAAGCTTCGTACAAGTACAGCACCTCCACTCAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGATTCTGTGGTTAGTGAATATGCCGAACACAATAATGCAATTTTGCTAGTTATTGTACCAGCAGCTCAAGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGAACTGCCAAGGAATTTGATGCAGACGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAGGCTCTCCTGTTAAATCAAGGGCCAGCAAGAGCATCAGATATCCCCTGGGTTGCTTTAATAGGTCAGTCGGTTTCAATAGCTACTACCCAGTCTGGATCTGTTGGCTCTGAGAATTCCTTGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGATGCATTGTCCCAACAAATCCGGAAGCAAATGAAAGTCCGGCTTCCTAATCTTCTTTCTGGGCTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTAGTTCGGCTTGGTGAGCAAATGGTGAACGGCGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTTGAGGGAAATTTTCCAAATCGAATCAAGCAATTACCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATCGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGACGAGGTGCACAGGGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTGCTGCCCTGGATGGGTTTAAAAATGAAGCAAAAAAGATGGTTGTGGCGTTAGTTGACATGGAGCGAGCATTTGTCCCACCGCAGCATTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGGACAAGAGGCTGAACAAGTGGTGACAAAGAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTACTACGGAAGAGAAGGAAGCGCAGGAAAGTACGGGTTTGAAGACAGCAGGTGCTGAAGGAGAGATAACAGCTGGTTTCTTGTTAAAGAGAAGTGCAAAAACTAATGGTTGGAGCAGGCGATGGTTTGTTTTAAATGAGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGAAACTTTCGTGGTGTCATTACTTTAGAGGATTGTAATATGGAAGAAGTTACAGATGAGGAAGAGCCTCCACCTTCAAAGAGTTCAAAGGATAAGAAGGCAAATGGACCAGATTCTGGAAAGGGATCAAGTCTTGCGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTAAAAGCCCATAGTGCTGTTGTTTTGAAAGCCGAGAGCGTCGCCGACAAGGTGGAATGGACAAACAAGATACGCCGTGTCATTCAACCATCCCGAGGAGGACAAACGAAAGGTGCATCCTCTGGAGGTGGTCTTACCTTGCGGCAAAGTCTATCTGATGGCTCTCTAGACACAATGACTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATATCTCAAGAAGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGACATGCTAAACCAATTATATAGCTCGATCAGTGGCCAAAGCTCAGCCAGGATTGAGGAGCTTCTTCTTGAGGAGCCGAACGTAAAACGGAGGAGAGAACGTTATCAAAAACAGTCCTCTCTCCTTTCGAAACTTACGCGCCAGCTTAGCATCCACGATAATAGTGCAGCTGCTGCTGGTTGGTCCGACAATGATGCAGCAGAAAGTAGTCCCCGAACTAGCGGAACGCCTGGAGATGACTGGAGATCTGCATTTGATGCAGCTGCTAATGGCCGGGTCGACTCCAGAAGATCTTCTTCCAATGGCCGCAGTAGGTATTCCAACGATCCCGCACAAAATGGTGACATAAACTCAGGTTCAAACTCGAGCAGCCGTCGTACTCCAAACCGTCTGCCACCAGCACCTCCACAGTCATCTTCTGCATCACAACAGACCTTACTTGATGATTCAGATTCTCAGCAACATTGGAAATCTCTTTCATGTAGCTTGGCAAGACTCTAA 2790 45.2 MDAIEELGELAESMRQAAALLADEDVDENSASSGSSRRAVTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDSSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDDSVVSEYAEHNNAILLVIVPAAQAPEIASSRALRTAKEFDADGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATTQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKQMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEQVVTKRASSPQTNSQQAGGSLKSMKEKPTTEEKEAQESTGLKTAGAEGEITAGFLLKRSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGVITLEDCNMEEVTDEEEPPPSKSSKDKKANGPDSGKGSSLAFKITSKVPYKTVLKAHSAVVLKAESVADKVEWTNKIRRVIQPSRGGQTKGASSGGGLTLRQSLSDGSLDTMTRKPADPEEELRWISQEAVVLCQVEKAKEDMLNQLYSSISGQSSARIEELLLEEPNVKRRRERYQKQSSLLSKLTRQLSIHDNSAAAAGWSDNDAAESSPRTSGTPGDDWRSAFDAAANGRVDSRRSSSNGRSRYSNDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSSASQQTLLDDSDSQQHWKSLSCSLARL 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8913046 8929631 + CmaCh09G012910.1 Cma09g01291 301296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01291 929 MobiDBLite consensus disorder prediction 899 929 - -
Cma09g01291 929 PANTHER DYNAMIN 2 838 IPR022812 -
Cma09g01291 929 MobiDBLite consensus disorder prediction 708 732 - -
Cma09g01291 929 MobiDBLite consensus disorder prediction 637 654 - -
Cma09g01291 929 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 309 IPR030381 GO:0005525
Cma09g01291 929 PANTHER DYNAMIN-2A 2 838 - -
Cma09g01291 929 Gene3D - 566 707 IPR011993 -
Cma09g01291 929 MobiDBLite consensus disorder prediction 532 553 - -
Cma09g01291 929 SMART dynamin_3 11 251 IPR001401 GO:0003924|GO:0005525
Cma09g01291 929 SMART PH_update 579 706 IPR001849 -
Cma09g01291 929 MobiDBLite consensus disorder prediction 856 891 - -
Cma09g01291 929 Pfam Dynamin GTPase effector domain 752 807 IPR003130 GO:0003924|GO:0005525
Cma09g01291 929 Coils Coil 781 801 - -
Cma09g01291 929 MobiDBLite consensus disorder prediction 631 662 - -
Cma09g01291 929 Pfam Dynamin family 45 209 IPR045063 -
Cma09g01291 929 MobiDBLite consensus disorder prediction 704 743 - -
Cma09g01291 929 Pfam PH domain 583 703 IPR001849 -
Cma09g01291 929 SUPERFAMILY PH domain-like 580 704 - -
Cma09g01291 929 PRINTS Dynamin signature 42 60 IPR022812 -
Cma09g01291 929 PRINTS Dynamin signature 179 197 IPR022812 -
Cma09g01291 929 PRINTS Dynamin signature 67 84 IPR022812 -
Cma09g01291 929 PRINTS Dynamin signature 198 214 IPR022812 -
Cma09g01291 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 318 IPR027417 -
Cma09g01291 929 Coils Coil 4 24 - -
Cma09g01291 929 Gene3D - 34 324 IPR027417 -
Cma09g01291 929 Pfam Dynamin central region 262 500 IPR000375 -
Cma09g01291 929 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Cma09g01291 929 Gene3D Dynamin, middle domain 337 538 - -
Cma09g01291 929 ProSiteProfiles PH domain profile. 578 704 IPR001849 -
Cma09g01291 929 MobiDBLite consensus disorder prediction 819 929 - -
Cma09g01291 929 MobiDBLite consensus disorder prediction 509 575 - -
Cma09g01291 929 CDD DLP_1 40 309 IPR001401 GO:0003924|GO:0005525
Cma09g01291 929 MobiDBLite consensus disorder prediction 509 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01291 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1533.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00877 Cma09g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g03021 Cma-Chr4:19718504 Cma09g01291 Cma-Chr9:8913046 0 dispersed
Cma09g01291 Cma-Chr9:8913046 Cma15g00020 Cma-Chr15:129983 0 dispersed
Cma01g00877 Cma-Chr1:4939885 Cma09g01291 Cma-Chr9:8913046 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01291 Cma_Chr09 FPKM 21.724745 25.417961 21.850267 22.577038 21.34771 20.887894 23.995506 32.388905 30.561371 31.826389