Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01292 ATGCGGAGACGTGTTGGAGCTCTTCTTCGTGATAGAAGAGCTGTTGAAGTGTGTATTAGTGGACGGAATCATTTGTACAAAGTTTCTCTGTCTTTGGTCTTTGTTCTGTGGGGACTTATCTTCCTCTTTAGCTTATGGTTCATCCGTGGGGATGGCTGTCAAGACGGATCAGTTTTACTTCCTGATGGTGTATCTACTTCAAATGAATCTACATTGGAAAGTAACAAGGACTCTGACGTTTTATATAAACCTTCAAAAGGAGAAACTGATTGTACCAGTCATTTAAACGATTCGTGCTCAAATGATGCTACAAGCCATGACGTTTTATACGAACCTTCGAAAGGAGAAACTGATTGTACCAGTCGTTTAAACGATTCGTGCTCAATTGATTCTACGAGCCAGGCTTCTGACAATGAAATGCTTTCAAGTGAAGAAAGTAGCAGTCATGTACTAGCTGCTACGGGGTTGCCTGAGGCTGAGAGCTCGAGTGCCAGAGTAAAATCTGAAAGTAAACCTCTCAAGGTAGATATCTCGTCAGACACTGTTCTACTGGGCCTTGAAGAATTCAAAAGCAGAGTCTTTACATCTCGGACTAAGGATGAAACTGGTCAGGCTGGGAATACTATCCATAGAGTAGAACCTGGTGGTGCTGAGTACAATTACGCTTCAGCTTCAAAGGGAGCAAAGGTGTTGGCTTTCAACAAGGAAGCAAAAGGAGCTTCTAACATCTTAGGCAAGGACAAAGATAAGTACCTCAGAAATCCATGTTCTGCTGAAGAGAAATTTGTTGTCATAGAACTTTCAGAAGAAACCTTGGTAGTAACAATCGAAATTGCTAATTTTGAGCACCATTCTTCTAACTTGAAAGAATTCGAGCTACATGGAAGTTTGGTTTATCCAACAGATGTTTGGTTCAAGCTTGGGAATTTCACTGCTCCAAATGCAAAGCATGCACATAGATTCGTTCTCAAAGACCCGAAATGGGTGAGGTACTTAAAGTTGAATCTTCTTACCCACTATGGTTCAGAATTCTATTGCACACTCAGCACGGTTGAAGTTTACGGAATGGATGCTGTTGAAATGATGCTAGAGGATTTGATATCTGCTCAACATAAACCCTCTATATCAGATGAAGCTACTATCGATAAGCGAGTAACTCCGTCCCAGCCTGGACCCAATGATGTAGGACAACAACATCGTAGAGAGTCTCAATCTCTTGCTAATGAGGAAAGTGATGAAGATGATGTTGTTTTAGAACTTTCAAAGAGTACTATACCTGATCCGGTCGAAGAATCGCACCATCAACAACCTGGCAGAATGCCTGGTGACACTGTTCTCAAAATTTTGACACAGAAAGTTCGTTCATTAGACCGAAGTCTATCTGTTCTGGAGCGGTATCTCGAGGACTCAACTTCCAAATATGGCAATATATTCAAAGAGTTCGACAAAGATATAGGAAATAATGGTTTACTTATTGAGAAGACCCGTGAGGATATAAGAAATATTCTTCAAATCCAGGATAGCACAGATAAAGATCTTCATGATCTCATGTCTTGGAAGTCCACTGTTTCCTTGCAGTTGGATGGTCTGCAAAGGCATAATGCTATTCTCAGATCTGAGATTGAAAGGGTCCAGAAGAATCAAACTTCTCTGGAAAACAAAGGAATAGTTGTTTTTGTTGTGTGCATCATTTTTTCATGGTTTGCTATTTTAAGATTATTTTTGCATATTGTTGTTAGAGTACGTGAGAGAACAAATAGTTCCAGGAAATTTTGTTGTATAAGCCCTTCCTGGCATGGAGAAGGAGAAATGGAGCATTCTAAGAAGCCATTCTTCTTCTCATCTTTTAACCCATTTTTGTTTGTGTTAATTTTTCTTCCTTCTCTTGTACTTGTTTCTCTAATTTGTAAGCTTGATTTGGAGATTCCTTGGACGACTGGCTTGGATAAGGTCTTCTCAAGTTTTGCTCCTCACTTGCTTGACCCAGCTGCTCTGGACCTCAAGGGACACTCTTTTTCCTCTCCCATTGAAGGATCACAAAAGACGGTACCTGAAAATAAAGAACGTAAGAGAAAAGATGCAACTCGGGGGATCAGTAGAGTTGAGAGATACAGTAAGTTGAAGAAAATAGAGGTGAAGTTGGGAAGAGCAAGAGCAAACATAAGAGAAGCGGGTCGAGTTCGTAACCTTACATCTGTACATGATGATCCTGACTATGTTCCTAAAGGTCCAATATATAGAAACCCAAATGCTTTCCACAGGAGCTACCTAGAAATGGAAAGGCTTTTGAAGATATACATATACAAGGAAGGAGAGCCACCAATGTTCCATGAAGGTCCATGCAAGAGCATATACTCCACAGAAGGAAGGTTCATTCATGAAATGGAGAAGGGAAACTCATACACAACCAATGACCCTGATCAAGCCCTTCTCTATTTCCTCCCTTTCAGCGTTGTCAATTTGGTTCAATATCTCTATGAACCAAACTCTCATGATGTTAATGCCATTGGCGTTGCAGTCCAAGACTATATCAATGTCATCTCGAACAAGCATTCTTTTTGGAATCGTAGCCTCGGTGCTGACCATTTCATGCTTTCGTGTCATGATTGGGGGCCACGAACCACCTCATACGTTCCGTATTTATTCAACAACTCCATCAGGGTATTGTGTAATGCAAATGTTTCAGAAGGTTTCCATCCCTCTAAAGACGCATCGTTCCCTGAAATCCATCTTCGAACAGGAGAAATCGATGGACTTCTCGGGGGACTCTCGCCATCTCGTCGACCTATTCTTGCATTCTTTGCAGGTCGTTTACACGGCCACATAAGGCACCTACTATTGCAAAAGTGGAAGGAAAAAGACGATGACGTGGTTGTTTACGACGAGCTTCCAAGCGGAGTATCATACGAGTCGATGTTGAAGAAGAGTCGGTTTTGTTTATGCCCAAGCGGGTATGAAGTAGCGAGTCCAAGAGTTGTGGAAGCTATATATGCTGAATGTGTTCCTGTGTTGATATCAGAAAGCTATGTTCCTCCTTTCAGTGATGTTTTGAATTGGAATTCATTTGGTGTGCAAATAGAAGTGAAGGATATAGGAAACATAAAAGAGATACTAAAAGGGATATCTCAATCTCAGTACTTGAGAATGCAAAGGAGAGTGAAGCAAGTTCAGAGGCACTTTGTGATTAATGGAACTCCCAAGAGATATGATGCTTTCCATATGATACTTCATTCGATCTGGCTCAGAAGGTTGAACGTACACATTCAAGATTAA 3273 41.0 MRRRVGALLRDRRAVEVCISGRNHLYKVSLSLVFVLWGLIFLFSLWFIRGDGCQDGSVLLPDGVSTSNESTLESNKDSDVLYKPSKGETDCTSHLNDSCSNDATSHDVLYEPSKGETDCTSRLNDSCSIDSTSQASDNEMLSSEESSSHVLAATGLPEAESSSARVKSESKPLKVDISSDTVLLGLEEFKSRVFTSRTKDETGQAGNTIHRVEPGGAEYNYASASKGAKVLAFNKEAKGASNILGKDKDKYLRNPCSAEEKFVVIELSEETLVVTIEIANFEHHSSNLKEFELHGSLVYPTDVWFKLGNFTAPNAKHAHRFVLKDPKWVRYLKLNLLTHYGSEFYCTLSTVEVYGMDAVEMMLEDLISAQHKPSISDEATIDKRVTPSQPGPNDVGQQHRRESQSLANEESDEDDVVLELSKSTIPDPVEESHHQQPGRMPGDTVLKILTQKVRSLDRSLSVLERYLEDSTSKYGNIFKEFDKDIGNNGLLIEKTREDIRNILQIQDSTDKDLHDLMSWKSTVSLQLDGLQRHNAILRSEIERVQKNQTSLENKGIVVFVVCIIFSWFAILRLFLHIVVRVRERTNSSRKFCCISPSWHGEGEMEHSKKPFFFSSFNPFLFVLIFLPSLVLVSLICKLDLEIPWTTGLDKVFSSFAPHLLDPAALDLKGHSFSSPIEGSQKTVPENKERKRKDATRGISRVERYSKLKKIEVKLGRARANIREAGRVRNLTSVHDDPDYVPKGPIYRNPNAFHRSYLEMERLLKIYIYKEGEPPMFHEGPCKSIYSTEGRFIHEMEKGNSYTTNDPDQALLYFLPFSVVNLVQYLYEPNSHDVNAIGVAVQDYINVISNKHSFWNRSLGADHFMLSCHDWGPRTTSYVPYLFNNSIRVLCNANVSEGFHPSKDASFPEIHLRTGEIDGLLGGLSPSRRPILAFFAGRLHGHIRHLLLQKWKEKDDDVVVYDELPSGVSYESMLKKSRFCLCPSGYEVASPRVVEAIYAECVPVLISESYVPPFSDVLNWNSFGVQIEVKDIGNIKEILKGISQSQYLRMQRRVKQVQRHFVINGTPKRYDAFHMILHSIWLRRLNVHIQD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8927228 8936205 - CmaCh09G012920.1 Cma09g01292 301297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01292 1090 Coils Coil 527 554 - -
Cma09g01292 1090 Gene3D - 236 366 - -
Cma09g01292 1090 Pfam Sad1 / UNC-like C-terminal 234 356 IPR012919 -
Cma09g01292 1090 ProSiteProfiles SUN domain profile. 194 358 IPR012919 -
Cma09g01292 1090 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 666 1087 IPR004263 GO:0006486|GO:0016757
Cma09g01292 1090 MobiDBLite consensus disorder prediction 130 150 - -
Cma09g01292 1090 MobiDBLite consensus disorder prediction 381 402 - -
Cma09g01292 1090 MobiDBLite consensus disorder prediction 675 695 - -
Cma09g01292 1090 MobiDBLite consensus disorder prediction 379 416 - -
Cma09g01292 1090 Pfam Exostosin family 761 1039 IPR040911 -
Cma09g01292 1090 SUPERFAMILY Galactose-binding domain-like 240 354 IPR008979 -
Cma09g01292 1090 PANTHER GLYCOSYLTRANSFERASE-RELATED 666 1087 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01292 - - - cmax:111472033 1179.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00876 Cma09g01292 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00925 Cma-Chr2:5497142 Cma09g01292 Cma-Chr9:8927228 1.80E-43 dispersed
Cma09g01292 Cma-Chr9:8927228 Cma15g01294 Cma-Chr15:8199287 1.24E-112 dispersed
Cma10g00519 Cma-Chr10:2370836 Cma09g01292 Cma-Chr9:8927228 3.12E-06 dispersed
Cma05g00375 Cma-Chr5:1658186 Cma09g01292 Cma-Chr9:8927228 1.54E-151 transposed
Cma07g00877 Cma-Chr7:4128840 Cma09g01292 Cma-Chr9:8927228 7.93E-180 transposed
Cma15g00019 Cma-Chr15:125127 Cma09g01292 Cma-Chr9:8927228 0 transposed
Cma16g00740 Cma-Chr16:3926435 Cma09g01292 Cma-Chr9:8927228 8.31E-72 transposed
Cma01g00876 Cma-Chr1:4935735 Cma09g01292 Cma-Chr9:8927228 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005606 0 3 0 0 0 1 3 1 1 1 1 1 2 1 2 2 1 0 3 1 1 2 3 1 1 1 2 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01292 Cma_Chr09 FPKM 7.78514 8.011506 6.715316 7.536023 6.419862 8.141653 7.107442 6.436827 6.018053 6.853324