Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01300 ATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTAATTTGGATGAAAGGGTAACCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGTCGGGTAGTAGACTTGCACATGCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTCTGGTCTCGTGACTCTTCATAATCGTACCCTGAAATTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTAGTGCAATCACTTCTTCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAAATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACATCGTGCAGGTTTTCAGCGTACCCTGAGAACCATCAAGAAGCTCTTCTTTACCCTGGTTTAGTGGACCAATATAATGGGTGTGGATTTCATTTGGATAACTATAATAACGAGCAAAGCCAGCGATATTCTAGGACAACTTTGGATAGCTTTTACCAAACTAAATCACGTCGCCATGATACGAGTTATCCAGTATACTATCCTCCTCACTAA 597 40.87 MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENEDITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNETSQYSNRLSTSCRFSAYPENHQEALLYPGLVDQYNGCGFHLDNYNNEQSQRYSRTTLDSFYQTKSRRHDTSYPVYYPPH 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9050485 9054544 - CmaCh09G013000.1 Cma09g01300 301305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01300 198 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 196 - -
Cma09g01300 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 82 IPR000504 GO:0003723
Cma09g01300 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 88 IPR000504 GO:0003723
Cma09g01300 198 SUPERFAMILY RNA-binding domain, RBD 5 82 IPR035979 GO:0003676
Cma09g01300 198 PANTHER OS01G0876500 PROTEIN 1 196 - -
Cma09g01300 198 Gene3D - 3 94 IPR012677 -
Cma09g01300 198 SMART rrm1_1 10 84 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01300 K12831 SF3B4, SAP49; splicing factor 3B subunit 4 - csv:101222164 276.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00868 Cma09g01300 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01300 Cma-Chr9:9050485 Cma06g01612 Cma-Chr6:10032264 1.95E-06 dispersed
Cma01g00868 Cma-Chr1:4901105 Cma09g01300 Cma-Chr9:9050485 1.75E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1709 Blo01g01680 Blo12g00814 . Bda03g00358 Bpe02g00261 . Bma04g00335 Bma01g02447 . . Cma01g00868 Cma09g01300 . . . Cpe06g00980 . . . . . . . . Cla08g00119 Cam08g0117 Cec08g0139 Cco08g0177 Clacu08g0128 Cmu08g0122 Cre08g0108 Cone4ag1156 . . . . . . Cme09g00085 . . . . . . . . . Cmo01g00911 . . . . Car09g01111 . Cpe02g00991 . . . . . . . . . . . . . . Lsi08g00104 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002883 1 6 2 2 1 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 3 3 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01300 Cma_Chr09 FPKM 4.241953 5.92849 5.655398 4.255648 2.609951 2.785104 2.01829 2.620388 3.502006 3.512153