Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g01302 ATGGCGTTGAATATGAAAACCCTCACCCAAGCCTTAGCCAAGACCGCTGCGGTGATCGAGAAAACTGTTCATACCACCGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAGCTTCTCGATCAGATCGGCTCCGCTGGTCCTGGCATGGCTTGGAAGTTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGCCTCAGCAATATCCCACTGTTTGCGTATGGGTTTTGGATAAGAAGATTCTGTCGGAGGCTAGGGCTCGCGTTGGGTTGTCGAAGTCTGTCGAGGATTCGTTTTTGGATCTGATTCGAGCTGATGCGGGGCGGTTGGTGAGGCTGAGGCATCCGGGAGTGGTTCATGTGGTTCAGGCGTTGGATGAGAATAAGAATGCCATGGCCATGGTTACCGAGCCGCTGTTTGCGTCGGTGGCGAATGCTGTTGGGAATGTGGAGAATATTGCTAAGGTTCCTAAGGAGCTCCAGGGTTTGGAAATGGGACTACTGGAAATAAAACATGGTTTGCTTCAGATAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGGGCTATATCTCCCGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGCAGATCAGACTTCGAGTGACATGGCTACTGTGCAAGCTTTCCATTATGCCGAGTATGATGTTGAAGATTCTGTGCTGCCTCTTCAGCCATCTCTGAATTACACTGCTCCCGAATTGGTTAGGAGTAAATCATCTTCGGCTGGTTGTTCCTCAGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGATTGCTAGAAAGCCTTTGTTTGACTGCCAAAACAATGTTAAAATGTACATGAACTCCTTAACTTACCTGTCAACTGGGTCATTTGCTTCAATTCCTCCGGAGTTAGTTCCTGACCTGCAGAGAATGCTCTCATCCAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACAGGTTCTCCATTTTTCCGAGATGACACAAGGCTGCGAGCTCTTCGTTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTTTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTCTGTGCAGAATTACGAAATCTAGTTATGCAGCCTATGATACTTCCCATGGTACTCACAATAGCAGAGTCTCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCTGTTCTGAGTACTGCTGCAGGTGACACATTGTTGCTGCTTGTGAAGCGTGCTGATCTTATAATTAACAAGACCAGTCAAGCACAATTAATGACCAATGTCTTGCCATTGATTGTTCGGGCTTATGATGATAATGATGCTCGCATACAAGAGGAGGTTCTGAGGAAATCAGTTTCCCTTGCTAAGCAACTTGATACACAGTTGGTGAAACAAACAATTTTGCCTCGTGTCCATGGTTTAGCTCTAAAGACAACAGTTGCTGCGGTTAGAGTTAATGCGTTGCTGTGCCTTGGAGAATTGGTTCAGACGCTTGATAAACATTCAGTTTTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTAGACAAATCTGCTCCCACTCTCATGTGTACCCTTGGGGTTGCAAACTCAATCCTTAAGCAGTATGGAATTGAATTTGTTGCGGAGCATGTTCTTCCTTTACTCATGCCTCTTCTTACAGCCCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGATGTTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCAATGTTTCTGATTCTGGAGTACCAGAGATGAAATCCTCTTTGGTTTCTAATGGCCCACAGCCCCAGTCATCAAGCAGAGCTAGTGATACTGTCGTTCCAACAGTAAAAGGTCGACCTGCATGGGATGAAGATTGGGGACCTATTTCTAAGGGACATACAACCCCACAAAATTCTACTAGCATTATCTCGTCTGCGCCTGCTGTTCTTGGTGGTCAATCCGTAGCAGGAAATTCTATACAAACAAACTCTGTTGTGATAACATCTCTGTCTAGTAATCAAACTGTCGCATCTTGCCTTCCAGTTGATGTTGAGTGGCCGCCTCGAAATTCTACTGGCGGTGCACCCAGAGTATCTGATTCTGGGATGCAAGCAACTACAGGAGAATCATCTACTTCAAGCTTGGATAATGTGGACCCTTTTGCTGACTGGCCTCCACGTCCTAGTGGCTCATTAGGAAATGCGTCTCAAGCTTCCAACAATGGGGTGGTTGGACCATCCATGAACAAATATGGAACTGTGGGTACATCGAACAGTTTGAACTTTCAAACAAACGGCAATGCCAGTTGGACCCTCAACAACAAAAATATTAGTGAACCAATGAGACAAAATCATGGCAATTCTACTTTCAATTCAAGCAGCCTGGGAACTGGGGGCTTCAATTCCCAAAGTTCTATTGGATTCCAGAAGCAAAAACAGGGAATATCATCCCAACATGCATATGATGCGGACAAAAAATTAACTGATCTTGGATCCATATTTGCGCCTAGTAAGAGTGGGAATAATATTGCACCTAGACTTGCCCCGCCCCCCTCAAATGCTGTTGGTAGAGGAAGAGGAAGAGGGAGGGGGGTTTCATCAACATCTCGTTCTACTCAAAATAAATCATCATCTGGACAACCTCCCCTAATGGATTTGCTGTAA 2787 44.71 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMAWKLYSAKARDSSRPQQYPTVCVWVLDKKILSEARARVGLSKSVEDSFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANAVGNVENIAKVPKELQGLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPADQTSSDMATVQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSSAGCSSDIFSFGCLAYHLIARKPLFDCQNNVKMYMNSLTYLSTGSFASIPPELVPDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKHDFELSTLPSLVPVLSTAAGDTLLLLVKRADLIINKTSQAQLMTNVLPLIVRAYDDNDARIQEEVLRKSVSLAKQLDTQLVKQTILPRVHGLALKTTVAAVRVNALLCLGELVQTLDKHSVLEILQTIQRCTAVDKSAPTLMCTLGVANSILKQYGIEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDVLRKIEEKRGVNVSDSGVPEMKSSLVSNGPQPQSSSRASDTVVPTVKGRPAWDEDWGPISKGHTTPQNSTSIISSAPAVLGGQSVAGNSIQTNSVVITSLSSNQTVASCLPVDVEWPPRNSTGGAPRVSDSGMQATTGESSTSSLDNVDPFADWPPRPSGSLGNASQASNNGVVGPSMNKYGTVGTSNSLNFQTNGNASWTLNNKNISEPMRQNHGNSTFNSSSLGTGGFNSQSSIGFQKQKQGISSQHAYDADKKLTDLGSIFAPSKSGNNIAPRLAPPPSNAVGRGRGRGRGVSSTSRSTQNKSSSGQPPLMDLL 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9068457 9084292 - CmaCh09G013020.1 Cma09g01302 301307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g01302 928 MobiDBLite consensus disorder prediction 812 860 - -
Cma09g01302 928 Gene3D Transferase(Phosphotransferase) domain 1 149 347 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 877 928 - -
Cma09g01302 928 Pfam Protein kinase domain 110 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01302 928 SUPERFAMILY ARM repeat 346 605 IPR016024 -
Cma09g01302 928 MobiDBLite consensus disorder prediction 771 791 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 625 679 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 905 922 - -
Cma09g01302 928 Gene3D - 348 620 IPR011989 -
Cma09g01302 928 MobiDBLite consensus disorder prediction 725 791 - -
Cma09g01302 928 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g01302 928 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 928 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 735 759 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 812 859 - -
Cma09g01302 928 MobiDBLite consensus disorder prediction 628 653 - -
Cma09g01302 928 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Cma09g01302 928 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 928 - -
Cma09g01302 928 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cma09g01302 928 CDD PK_SCY1_like 45 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g01302 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1620.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00863 Cma09g01302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01302 Cma-Chr9:9068457 Cma12g00950 Cma-Chr12:7442821 1.58E-21 dispersed
Cma01g00863 Cma-Chr1:4864357 Cma09g01302 Cma-Chr9:9068457 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1671 . . . . . . . . . . . Cma09g01302 . . . . . Bhi04g02576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00296 . . . . . . . . . . . . . . . . Cla11g00842 Cam11g0873 Cec11g0873 Cco11g0869 Clacu11g0989 Cmu11g0840 Cre11g1317 . . . .
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68818 PF00069 Pkinase 1.30E-23 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g01302 Cma_Chr09 FPKM 11.936531 14.126531 14.703446 16.482641 11.356369 11.904263 12.189753 19.726547 18.331385 19.616297