Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00008 ATGAAGGCGAAGGAGTTGTCTTTTAGGTCGCTGTATTGGCGCCGGACGGGTAAGCTGAAGATGTTCCAGAAGCAGAGATACTTGGACCGCCAAAGGATTACTTCCGCCCTTCTTGCTACCTCTGCCTATGCTTTACCAGGCCCCCTTCGAATTCCAAGGGTTCCACTTTCTTCACTCCCTTTCACCTCTTCTCCCATACATGTACACTATACCTCTTGCGCTTCTCTTCCCAATCCTCTCGCACTCCTCAATTTCATGTCAATTCGCTGCATTTGTTTTCTGCCTCCGTCTCCTCCCTCTTCCATTCCCTGGAATTCTAATGAACTTGAGCACGCAAATTCTACTTCTAAGTTCACCGTAGAAGCAGGTAACGGTTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTCCCCCTCGAATTCCAAAACCGCTTCTGAAACGCATGCAAGAATGATTAAATTTGGATATGGAAACTACCCAACTCTCGTCACCTCTCTAGTATCAGCTTATCAACGTGCTGATTGCCTTAATCGGGTCCATCAACTTCTTAATCTACTCTGCTCTAAACATCTTGATTTAGTTGCAATGAACTTATTTATTGACAATTTTATGAAAATAGGGGAATGCAAACTTGCTAAAAGGGTGTTCGATAAAATGCCTTACCGTGATGTGGTAACGTGGAACTCAATCATCGGAGGTTGTGTGAAGAATGCACGGTATGAGGAGGCATTTAAATTCTTTAGGCAGATGCTGGTCTCAAATATCCAGCCGGATGGGTTTACATTTGCTTCCGTGTTGAATGCATGTGCGCAGCTCGGAGCTCCAAGTAACACTCAGTGGGTTCATGCTCTGATGACTCAGAAAAAAATTGACCTTAATTCTATATTGAGTTGTGCACTCATAGACGCCTACTCAAAGTGTGGCAGCATCCAAATTGCAAAGGAAATCTTTAGCAGCGTCCCTCGCAGTAACATCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCGATTCATGGGCTTTCAATGGATGCACTATCGGTATTCTGGATGATGGAGCGTGAGAATGTTCTGCCTGATGCTGTCACCTTTTTGGGTATCTTAACAGCCTGCAACCATGGTGGCTTAATTGAACAGGGTCGCAGGTTTTTTGATTGGATGAAAAACCGTTATTCAATTCAGCCACAGCTCGAACATTATGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTCGAGGAGGCCTACTCCATAATCGTAGCAATGCCCATAGAGGCAGATGTTGTGACATGGAGGGCGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAGAACTCGCAGAAGTTGCTATTGCAAACATGTCTCATCGTGGGAGTGGAGATTACGTGTTGCTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAGAGAGTTAGAGAGAGGATGAAAAGCAATGGAGTTCGCAAGAGTTGCGGAAAAAGCTGGATTGAGTTGGGAGGTTCCATTCAAAGCTTCAGGTCAGGTGACCGATCGCATCCAGAAAGCGATGCAGTGTACAAGGTGGTGTGGCGTTTGATGAAGAGAAGTCGGTCAGAGGGATATATGCCTGTGACAGACTTGGTTCTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTGTCATATCACAGCGAAAAGTTGGCATTGGCGTATGCGATCCTGAAAACTAGTCCAGGGGCAAAAATCAGTATATCAAAGAACCTACGGATGTGTGATGATTGTCATAGATGGATAAAAATAGTTTCAACACTGCTGTGCAGAGTTGTAGTAGTGAGAGATCGGATCCGGTTTCATCAATTCGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAG 1893 44.96 MKAKELSFRSLYWRRTGKLKMFQKQRYLDRQRITSALLATSAYALPGPLRIPRVPLSSLPFTSSPIHVHYTSCASLPNPLALLNFMSIRCICFLPPSPPSSIPWNSNELEHANSTSKFTVEAGNGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRVHQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNARYEEAFKFFRQMLVSNIQPDGFTFASVLNACAQLGAPSNTQWVHALMTQKKIDLNSILSCALIDAYSKCGSIQIAKEIFSSVPRSNISVWNAMIKGLAIHGLSMDALSVFWMMERENVLPDAVTFLGILTACNHGGLIEQGRRFFDWMKNRYSIQPQLEHYGVMVDLYSRAGFLEEAYSIIVAMPIEADVVTWRALLSGCRIYRNQELAEVAIANMSHRGSGDYVLLSNIYCSLNRWEHAERVRERMKSNGVRKSCGKSWIELGGSIQSFRSGDRSHPESDAVYKVVWRLMKRSRSEGYMPVTDLVLMDISEEEKEENLSYHSEKLALAYAILKTSPGAKISISKNLRMCDDCHRWIKIVSTLLCRVVVVRDRIRFHQFEGGMCSCGDRW 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25625 27921 - CmaCh10G000080.1 Cma10g00008 301324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00008 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 119 576 - -
Cma10g00008 630 Pfam E motif 443 502 IPR046848 -
Cma10g00008 630 PANTHER OS07G0578800 PROTEIN-RELATED 119 576 IPR045215 GO:0003723|GO:0009451
Cma10g00008 630 Gene3D Tetratricopeptide repeat domain 323 512 IPR011990 GO:0005515
Cma10g00008 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Cma10g00008 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cma10g00008 630 Pfam PPR repeat family 224 272 IPR002885 -
Cma10g00008 630 Pfam PPR repeat family 326 372 IPR002885 -
Cma10g00008 630 Pfam DYW family of nucleic acid deaminases 538 630 IPR032867 GO:0008270
Cma10g00008 630 Gene3D Tetratricopeptide repeat domain 131 281 IPR011990 GO:0005515
Cma10g00008 630 Pfam PPR repeat 400 424 IPR002885 -
Cma10g00008 630 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Cma10g00008 630 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Cma10g00008 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00008 - - - cmos:111430093 1225.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00008 Cma-Chr10:25625 Cma03g00948 Cma-Chr3:6768897 9.42E-24 dispersed
Cma10g00008 Cma-Chr10:25625 Cma01g01443 Cma-Chr1:10162705 4.37E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00008 Cma_Chr10 FPKM 6.159629 5.854515 15.758551 15.244607 9.77945 9.874565 9.657543 13.541871 12.261337 14.360129